Detailed information NTG0518190

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: JC777_RS06950
• Genome accession: NZ_CP066184
• Coordinates: 1214127..1215473 (+)
• Length: 448 a.a.
• NCBI ID: WP_157671223.1
• Uniprot ID: -
• Organism: Bacillus cytotoxicus strain SM1.1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1209127..1220473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC777_RS06930 (JC777_06930)	-	1210028..1210666 (-)	639	WP_012096185.1	YigZ family protein	-
JC777_RS06935 (JC777_06935)	-	1211057..1211899 (+)	843	WP_012096184.1	DegV family protein	-
JC777_RS06940 (JC777_06940)	-	1212184..1212498 (+)	315	WP_012096183.1	helix-turn-helix domain-containing protein	-
JC777_RS06945 (JC777_06945)	-	1212769..1213998 (+)	1230	WP_087099355.1	C40 family peptidase	-
JC777_RS06950 (JC777_06950)	comFA	1214127..1215473 (+)	1347	WP_157671223.1	DEAD/DEAH box helicase	Machinery gene
JC777_RS06955 (JC777_06955)	-	1215473..1216177 (+)	705	WP_048723493.1	ComF family protein	-
JC777_RS06960 (JC777_06960)	-	1216300..1216497 (+)	198	WP_012096179.1	cold shock domain-containing protein	-
JC777_RS06965 (JC777_06965)	raiA	1216851..1217390 (+)	540	WP_012096178.1	ribosome-associated translation inhibitor RaiA	-
JC777_RS06970 (JC777_06970)	secA	1217753..1220263 (+)	2511	WP_087099353.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 51417.28 Da
• Isoelectric Point: 9.7376

>NTDB_id=518190 JC777_RS06950 WP_157671223.1 1214127..1215473(+) (comFA) [Bacillus cytotoxicus strain SM1.1]
MQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKNSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVSE
CTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIATP
RKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYVMDHMLHEAVRKAAK
EDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFLF
VPHICYVEEVTAVLQRLHHKITGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVANLQVAVLGAEEDIFSESALVQ
IAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKREGLID

Nucleotide

• Length: 1347 bp

>NTDB_id=518190 JC777_RS06950 WP_157671223.1 1214127..1215473(+) (comFA) [Bacillus cytotoxicus strain SM1.1]
ATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGGGGA
GATTGTATTAGAAAAAGGGATTGTTCGAAAAAATTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTCTAT
TTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGCGAA
TGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATTGTC
ACCGGGGCAAAATAGAGCTGCAAAGGGGGTAGTAGAAGCGATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTATGTG
GTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACGCCT
CGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGGAGG
CAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTGATG
TCATGATTATAGATGAAATTGATGCTTTTCCGTATGTGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCGAAG
GAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAAAGG
TGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAACTAC
TTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTATTT
GTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTACTGGTGTTCATGCAGA
AGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCATTACTCATAACTACAACTATATTGGAGA
GAGGGGTAACGGTCGCGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTTCAG
ATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGCAAT
GACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACGAGAAGGGTTGATAGATTGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (106-253)

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.113	98.438	0.493
comFA	Latilactobacillus sakei subsp. sakei 23K	38.626	94.196	0.364