Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JC777_RS05525 Genome accession   NZ_CP066184
Coordinates   919841..920962 (-) Length   373 a.a.
NCBI ID   WP_087099628.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM1.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914841..925962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS05515 (JC777_05515) gyrA 915324..917789 (-) 2466 WP_011983153.1 DNA gyrase subunit A -
  JC777_RS05520 (JC777_05520) gyrB 917880..919802 (-) 1923 WP_087099630.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JC777_RS05525 (JC777_05525) recF 919841..920962 (-) 1122 WP_087099628.1 DNA replication/repair protein RecF Machinery gene
  JC777_RS05530 (JC777_05530) yaaA 920975..921187 (-) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  JC777_RS05535 (JC777_05535) dnaN 921312..922457 (-) 1146 WP_087099626.1 DNA polymerase III subunit beta -
  JC777_RS05540 (JC777_05540) dnaA 922635..923975 (-) 1341 WP_048723589.1 chromosomal replication initiator protein DnaA -
  JC777_RS05545 (JC777_05545) rpmH 924540..924674 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  JC777_RS05550 (JC777_05550) rnpA 924751..925098 (+) 348 WP_012096472.1 ribonuclease P protein component -
  JC777_RS05555 (JC777_05555) spoIIIJ 925157..925924 (+) 768 WP_012096471.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43116.43 Da        Isoelectric Point: 6.7810

>NTDB_id=518184 JC777_RS05525 WP_087099628.1 919841..920962(-) (recF) [Bacillus cytotoxicus strain SM1.1]
MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
VSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKAIQGKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKE
VYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYAEVKEYPILLLDDVLSEL
DDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKKAKTIHVKSGTVDCEIDRI

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=518184 JC777_RS05525 WP_087099628.1 919841..920962(-) (recF) [Bacillus cytotoxicus strain SM1.1]
TTGTTTATTTCAGAAATACAATTAAAAAATTATCGAAATTATGAAGATTTAAACCTTTCTTTTGAGGATAAAGTCAATGT
AATCATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCGATCTATGTGTTAGCAATGGCGAAATCTCATAGAA
CTTCAAATGATCGTGAACTCATCCGATGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCC
GTATCTTTGGAATTAAATATTTCTAAAAAAGGAAAAAAGGCAAAATTGAATGAACTTGAACAACAAAAGTTGAGCCAATA
TATTGGTGAGATGAACGTTGTTATGTTTGCCCCTGAAGATTTAAATCTTGTAAAAGGAAGTCCTCAAGTCAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACACAACGA
AACCATTTGCTTAAGGCAATACAAGGTAAAAATGAGGAAACGATGTTGGATGTATTTACGCTTCAACTTATTGAACATGG
TACGAAAATTCTACAAAAACGTTTTGAATTCTTACATTTACTACAAGAGTGGGCTGCTCCAATCCATCGTGGGATTAGCA
GAGGGCTTGAGGAATTGGAAATCGTTTATAAGCCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATAAAAGAA
GTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCGTGATGA
TTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGCTCACAAGGCCAGCAACGAACAACTGCACTATCCCTAA
AATTAGCTGAAATTGAATTGATTTATGCAGAGGTAAAAGAGTACCCAATTCTTTTATTAGATGATGTATTATCAGAATTA
GATGATTACCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGTCGACGG
AATTGAACACGAAACATTAAAAAAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACAGAATAT
AA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.66

0.657