Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC777_RS05320 Genome accession   NZ_CP066184
Coordinates   881472..881756 (+) Length   94 a.a.
NCBI ID   WP_011983177.1    Uniprot ID   A7GJU9
Organism   Bacillus cytotoxicus strain SM1.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 876472..886756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS05300 (JC777_05300) rsmA 876593..877471 (-) 879 WP_087097518.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  JC777_RS05305 (JC777_05305) rnmV 877468..878025 (-) 558 WP_011983180.1 ribonuclease M5 -
  JC777_RS05310 (JC777_05310) - 878180..878947 (-) 768 WP_087097516.1 TatD family hydrolase -
  JC777_RS05315 (JC777_05315) metG 879107..881086 (-) 1980 WP_011983178.1 methionine--tRNA ligase -
  JC777_RS05320 (JC777_05320) abrB 881472..881756 (+) 285 WP_011983177.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC777_RS05325 (JC777_05325) rsmI 881777..882652 (-) 876 WP_087097512.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JC777_RS05330 (JC777_05330) - 882621..882911 (-) 291 WP_087097511.1 GIY-YIG nuclease family protein -
  JC777_RS05335 (JC777_05335) - 882898..883638 (-) 741 WP_087097509.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JC777_RS05340 (JC777_05340) yabA 883768..884118 (-) 351 WP_011983173.1 DNA replication initiation control protein YabA -
  JC777_RS05345 (JC777_05345) - 884133..884960 (-) 828 WP_140388370.1 stage 0 sporulation family protein -
  JC777_RS05350 (JC777_05350) holB 884966..885949 (-) 984 WP_011983171.1 DNA polymerase III subunit delta' -
  JC777_RS05355 (JC777_05355) tmk 885985..886611 (-) 627 WP_011983170.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10563.27 Da        Isoelectric Point: 6.4662

>NTDB_id=518182 JC777_RS05320 WP_011983177.1 881472..881756(+) (abrB) [Bacillus cytotoxicus strain SM1.1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLSLADGKIILSKEGAE
QILNELQHYIQSAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518182 JC777_RS05320 WP_011983177.1 881472..881756(+) (abrB) [Bacillus cytotoxicus strain SM1.1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGCCGCGTGGTAATTCCGATCGAACTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTGGATGACGAAAAAATCATCCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCAGATCATAACTTATCTTTAGCTGACGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAATTACAACACTACATTCAATCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862