Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JC777_RS03410 Genome accession   NZ_CP066184
Coordinates   515500..516453 (-) Length   317 a.a.
NCBI ID   WP_048724317.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM1.1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510500..521453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS03380 (JC777_03380) - 510746..510889 (-) 144 WP_157671232.1 hypothetical protein -
  JC777_RS03385 (JC777_03385) thiE 510935..511588 (-) 654 WP_011983480.1 thiamine phosphate synthase -
  JC777_RS03390 (JC777_03390) thiM 511602..512411 (-) 810 WP_087097617.1 hydroxyethylthiazole kinase -
  JC777_RS03395 (JC777_03395) - 512765..513712 (-) 948 WP_011983478.1 siderophore ABC transporter substrate-binding protein -
  JC777_RS03400 (JC777_03400) - 513787..514545 (-) 759 WP_011983477.1 ABC transporter ATP-binding protein -
  JC777_RS03405 (JC777_03405) - 514539..515510 (-) 972 WP_011983476.1 iron chelate uptake ABC transporter family permease subunit -
  JC777_RS03410 (JC777_03410) ceuB 515500..516453 (-) 954 WP_048724317.1 ABC transporter permease Machinery gene
  JC777_RS03415 (JC777_03415) - 517068..519257 (+) 2190 WP_087097615.1 DNA topoisomerase III -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35198.46 Da        Isoelectric Point: 10.1714

>NTDB_id=518178 JC777_RS03410 WP_048724317.1 515500..516453(-) (ceuB) [Bacillus cytotoxicus strain SM1.1]
MKKRYLFIMLIVLSVASIFIGVKDVSLTDVLHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFIAFIFALAGTFLFMQILKRIKFKDAIFIPLVGIMFGNIISSITTFFAYKYDLI
QNINSWLQGDFSMIMKGRYEILYFSIPLVIIAFLYANRFTVAGMGEDFAANLGMNYNRVLNIGLIIVSLISALVVLTVGM
IPFLGLIIPNIVSIYRGDHLKNSLPHTALLGAVFVLACDILGRVVIYPYEISIGLTVGVIGSGIFLYLLMRRNAYAT

Nucleotide


Download         Length: 954 bp        

>NTDB_id=518178 JC777_RS03410 WP_048724317.1 515500..516453(-) (ceuB) [Bacillus cytotoxicus strain SM1.1]
ATGAAAAAAAGATATTTATTTATCATGCTTATTGTTTTATCGGTTGCATCTATTTTTATTGGTGTAAAAGATGTGAGTCT
AACAGATGTTTTGCATTGGAATCAAGAGAAAATGCAAATTGTATTTATCAGTAGATTACCACGTCTCATTAGTATTATTG
TTGCTGGTGTCAGTTTAAGTATAAGTGGTTTAATTATGCAGCAACTGAGCAGAAATAAGTTTGTATCTCCAACAACTGCG
GGAACGATGGATAGTGCAAAGTTGGGCGTTTTAGTCTCCTTAATGTTATTTACGACAGCAAGCCCGCTTGAAAAAATGTT
TATCGCATTTATTTTTGCGCTAGCTGGTACATTTTTGTTTATGCAAATTTTAAAGCGAATTAAATTTAAAGATGCCATTT
TTATTCCGCTTGTTGGAATTATGTTTGGAAACATTATTAGTTCCATTACAACATTTTTTGCTTATAAATATGATTTAATT
CAAAATATTAATTCGTGGCTACAAGGTGACTTTTCAATGATTATGAAGGGGAGATATGAGATCTTATATTTCAGTATTCC
GCTTGTAATCATCGCCTTTTTATATGCAAATCGTTTTACCGTTGCTGGAATGGGGGAAGATTTTGCAGCGAATTTAGGAA
TGAATTACAATCGAGTGCTAAATATTGGGCTTATTATCGTTTCTCTCATCTCTGCATTAGTTGTTTTAACTGTTGGGATG
ATTCCATTTTTAGGACTTATTATTCCAAATATCGTTTCAATTTATCGCGGAGATCATTTGAAAAATAGTTTACCTCATAC
TGCCTTGTTAGGAGCTGTTTTTGTACTAGCTTGCGATATACTTGGTAGGGTCGTAATTTATCCGTATGAAATTTCGATTG
GTCTTACAGTAGGAGTGATCGGAAGCGGAATCTTCCTTTATTTATTAATGAGGAGAAACGCATATGCAACATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536