Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JC774_RS20135 Genome accession   NZ_CP066179
Coordinates   3868483..3870309 (-) Length   608 a.a.
NCBI ID   WP_011983996.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM2.8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3863483..3875309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS20105 (JC774_20105) - 3863926..3864723 (-) 798 WP_011984002.1 NAD kinase -
  JC774_RS20110 (JC774_20110) - 3864742..3865380 (-) 639 WP_011984001.1 GTP pyrophosphokinase family protein -
  JC774_RS20115 (JC774_20115) - 3865411..3865782 (-) 372 WP_011984000.1 hypothetical protein -
  JC774_RS20120 (JC774_20120) - 3865927..3866505 (+) 579 WP_011983999.1 CYTH domain-containing protein -
  JC774_RS20125 (JC774_20125) - 3866743..3867141 (+) 399 WP_011983998.1 globin -
  JC774_RS20130 (JC774_20130) - 3867141..3868034 (+) 894 WP_011983997.1 ClpXP adapter SpxH family protein -
  JC774_RS20135 (JC774_20135) pepF 3868483..3870309 (-) 1827 WP_011983996.1 oligoendopeptidase F Regulator
  JC774_RS20140 (JC774_20140) - 3870402..3871604 (-) 1203 WP_109090165.1 competence protein CoiA family protein -
  JC774_RS20145 (JC774_20145) cls 3871696..3873240 (-) 1545 WP_011983994.1 cardiolipin synthase -
  JC774_RS20150 (JC774_20150) mecA 3873340..3874014 (-) 675 WP_011983993.1 adaptor protein MecA Regulator
  JC774_RS20155 (JC774_20155) - 3874422..3875096 (+) 675 WP_011983992.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70608.28 Da        Isoelectric Point: 5.0992

>NTDB_id=518167 JC774_RS20135 WP_011983996.1 3868483..3870309(-) (pepF) [Bacillus cytotoxicus strain SM2.8]
MSEQNAGKVLPDRSEIEEKNTWRLEDIFQTDEAWEKEFQAIKELLPKLNEFKGKLGDSAESLLAALQYEDEISMRLGKLY
TYAHMRYDQDTTNSTYQALNDRAMNLYSQVSSSTAYIVPEILKISQELLQSFLQENKELRVYEHALEEITRQRPHVLSEA
EESLLAEAAEVMSSSSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDRRVRHDAFHAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNHIPETVYDQLIETVHNHLHLLHRYIDIRKRALKLDELHMYDLYTPLVPEVKM
NVKYEEAQEILLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHQKVQ
EGHAVTPDMLTEIYYDLNKTYFGDAVVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVERYINEF
LKAGSSDYPIEVLKKAGVDMTSPEPVKEALQVFEEKLNELEALLFEKK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=518167 JC774_RS20135 WP_011983996.1 3868483..3870309(-) (pepF) [Bacillus cytotoxicus strain SM2.8]
ATGTCGGAACAAAATGCAGGAAAAGTATTACCAGATCGCAGTGAAATTGAAGAAAAAAATACGTGGCGTTTAGAAGATAT
CTTTCAAACGGATGAAGCGTGGGAAAAAGAATTTCAAGCCATAAAAGAGCTATTACCGAAGTTAAATGAGTTTAAGGGTA
AGCTTGGTGATTCTGCCGAGTCCTTATTAGCAGCATTACAATATGAAGATGAAATTTCTATGCGGTTAGGAAAATTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACCAATTCTACTTATCAAGCACTCAACGATCGTGCGATGAACTTATA
CTCACAAGTTTCCAGTAGCACAGCATACATCGTGCCTGAAATTTTAAAGATTTCACAAGAACTGTTACAGTCGTTCTTAC
AGGAAAATAAAGAATTACGCGTGTATGAACATGCATTAGAAGAGATTACACGTCAGCGTCCTCACGTATTATCTGAGGCT
GAAGAATCATTGCTGGCAGAAGCGGCTGAAGTCATGAGTTCTTCAAGTAATACATTTGGGATGTTGAATAATGCGGATTT
AAAATTTCCATCGATTAAAGATGAGAATGGAGAGGAAGTAGAAGTTACGCATGGTCGCTATATTCAATTTTTAGAGAGTG
ATGATCGTCGCGTGCGCCATGATGCTTTTCATGCTGTGTATGAAACGTACGGGAAATTTAAAAATACATTTGCGAGTACT
TTAAGTGGTGCGGTAAAACGCAATAACTTCAATGCTCGCGTACGCAAATATGATTCTGCACGTCAAGCAGCATTAAGTAA
CAATCATATTCCGGAAACGGTATATGATCAACTTATCGAAACCGTACACAATCATTTACATTTATTACACCGTTACATTG
ATATTCGTAAACGTGCATTAAAACTCGATGAATTACATATGTACGACTTATACACTCCTCTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGAGATTTTATTAAAATCGTTACATGTTCTTGGTGACGAATATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAAAATAAAGGGAAGCGTAGCGGAGCTTATTCATCTGGAGCATATG
GAACAAACCCATATATCTTAATGAACTGGCATGATAATGTAAATAACTTATTTACATTAGCGCATGAATTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTGTATGGAGATTATTCCATCTTTGTGGCTGAAGTTGCTTCTAC
ATGTAATGAAGCGCTTCTTAATGACTATCTGTTAAAAACAACAGAAGATAAAAAAGAGCGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGAACAGTATTCCGTCAAACGATGTTTGCGGAATTTGAACATATCATCCATCAAAAGGTACAA
GAAGGTCATGCAGTAACACCAGATATGTTAACTGAAATTTACTATGACTTAAATAAAACATACTTTGGAGATGCCGTAGT
AATTGATAAAGAAATTGGATTAGAATGGTCCCGTATCCCGCATTTCTATTACAATTACTACGTATACCAATATGCAACAG
GATTTAGTGCAGCGACTGCTTTATCGAAACAGATTTTAGAAGAAGGAAAGCCAGCAGTAGAGCGCTATATTAATGAATTC
TTAAAAGCTGGAAGCTCCGATTATCCAATCGAGGTATTGAAAAAAGCAGGGGTAGATATGACATCACCAGAGCCTGTTAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAGTTAGAAGCTTTATTATTTGAAAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488