Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JC774_RS19640 Genome accession   NZ_CP066179
Coordinates   3774505..3774828 (+) Length   107 a.a.
NCBI ID   WP_011984082.1    Uniprot ID   A7GMH1
Organism   Bacillus cytotoxicus strain SM2.8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3774965..3776547 3774505..3774828 flank 137


Gene organization within MGE regions


Location: 3774505..3776547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS19640 (JC774_19645) sinR 3774505..3774828 (+) 324 WP_011984082.1 helix-turn-helix domain-containing protein Regulator
  JC774_RS19645 (JC774_19650) - 3774965..3776334 (+) 1370 Protein_3820 IS1182 family transposase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12380.21 Da        Isoelectric Point: 8.6049

>NTDB_id=518166 JC774_RS19640 WP_011984082.1 3774505..3774828(+) (sinR) [Bacillus cytotoxicus strain SM2.8]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=518166 JC774_RS19640 WP_011984082.1 3774505..3774828(+) (sinR) [Bacillus cytotoxicus strain SM2.8]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTGGAAAAAATCGCAGCCGTTC
TGCAAATACCCATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GMH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.22

100

0.654