Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JC774_RS09195 Genome accession   NZ_CP066179
Coordinates   1753429..1754175 (+) Length   248 a.a.
NCBI ID   WP_048723863.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM2.8     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1748429..1759175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS09165 (JC774_09165) - 1748868..1751012 (+) 2145 WP_012095493.1 HD family phosphohydrolase -
  JC774_RS09170 (JC774_09170) ybeY 1751009..1751479 (+) 471 WP_012095492.1 rRNA maturation RNase YbeY -
  JC774_RS09175 (JC774_09175) - 1751476..1751829 (+) 354 WP_012095491.1 diacylglycerol kinase family protein -
  JC774_RS09180 (JC774_09180) - 1751884..1752243 (+) 360 Protein_1680 cytidine deaminase -
  JC774_RS09185 (JC774_09185) era 1752236..1753141 (+) 906 WP_012095490.1 GTPase Era -
  JC774_RS09190 (JC774_09190) - 1753252..1753395 (+) 144 WP_012095489.1 YqzL family protein -
  JC774_RS09195 (JC774_09195) recO 1753429..1754175 (+) 747 WP_048723863.1 DNA repair protein RecO Machinery gene
  JC774_RS09200 (JC774_09200) - 1754282..1754914 (+) 633 WP_087095438.1 helix-turn-helix transcriptional regulator -
  JC774_RS09205 (JC774_09205) - 1754944..1755756 (+) 813 WP_048723865.1 pyruvate, water dikinase regulatory protein -
  JC774_RS09210 (JC774_09210) - 1756062..1756520 (+) 459 WP_012095485.1 YaiI/YqxD family protein -
  JC774_RS09215 (JC774_09215) dnaG 1756559..1758355 (+) 1797 WP_048723866.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28682.16 Da        Isoelectric Point: 7.4196

>NTDB_id=518150 JC774_RS09195 WP_048723863.1 1753429..1754175(+) (recO) [Bacillus cytotoxicus strain SM2.8]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISVMARGAKKPKSRLASISQLMTHGHFLIQMGSGLGTLQQGEMISSMKE
IREDIFLTAYASFIVELTDKATEDKKNNPYLFEMLYQTLHYMCDGVDSEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCFRHAEQDPYRIPVGEAVHKLLRLFYHFDLGRLGNVSVKDETKRQIRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=518150 JC774_RS09195 WP_048723863.1 1753429..1754175(+) (recO) [Bacillus cytotoxicus strain SM2.8]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGAACAACAGATTACGGAGAAACGAACAAGATTGTTACTATATTTTCTCG
TGAATTTGGAAAAATAAGTGTAATGGCAAGAGGAGCGAAAAAACCAAAAAGTAGGTTAGCATCTATTTCGCAACTCATGA
CGCATGGTCATTTCCTAATTCAAATGGGATCTGGTCTCGGAACTTTGCAACAAGGTGAAATGATTTCATCGATGAAAGAA
ATTCGAGAAGATATTTTTTTAACTGCTTATGCATCGTTTATCGTGGAATTGACAGATAAAGCCACGGAAGATAAAAAGAA
CAATCCGTATTTATTTGAAATGTTATATCAGACACTTCACTATATGTGTGATGGTGTTGATTCTGAAGTATTATCTCTTA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCATCCATACTTTGATACATGTGCGATTTGTCACCAAGAAACAGAC
TTTGTCGCCTTCTCTGTAAGAGAAGGCGGTTTTCTGTGCTTTCGTCACGCAGAACAAGATCCGTATCGCATTCCAGTTGG
TGAGGCGGTTCATAAGTTATTACGTCTCTTTTATCACTTTGACTTAGGTCGGCTTGGTAATGTATCAGTAAAAGATGAAA
CGAAGCGACAAATTCGTACCGTATTGAATACATATTATGATGAATATTGTGGCATATATTTGAAATCAAGACGTTTTCTT
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

56.68

99.597

0.565