Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JDZ43_RS15495 Genome accession   NZ_CP066173
Coordinates   3177839..3178435 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KP2011790     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172839..3183435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDZ43_RS15480 (JDZ43_15480) helD 3173050..3175104 (-) 2055 WP_049116482.1 DNA helicase IV -
  JDZ43_RS15485 (JDZ43_15485) - 3175229..3175675 (+) 447 WP_004201437.1 YccF domain-containing protein -
  JDZ43_RS15490 (JDZ43_15490) yccS 3175693..3177828 (+) 2136 WP_004201435.1 YccS family putative transporter -
  JDZ43_RS15495 (JDZ43_15495) sxy/tfoX 3177839..3178435 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  JDZ43_RS15500 (JDZ43_15500) - 3178453..3178758 (-) 306 WP_153351982.1 hypothetical protein -
  JDZ43_RS15505 (JDZ43_15505) sulA 3178784..3179293 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  JDZ43_RS15510 (JDZ43_15510) ompA 3179646..3180716 (+) 1071 WP_002898408.1 porin OmpA -
  JDZ43_RS15515 (JDZ43_15515) matP 3180905..3181357 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JDZ43_RS15520 (JDZ43_15520) - 3181543..3183300 (+) 1758 WP_048323579.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=518113 JDZ43_RS15495 WP_048323585.1 3177839..3178435(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KP2011790]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=518113 JDZ43_RS15495 WP_048323585.1 3177839..3178435(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KP2011790]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5