Detailed information NTG0518090

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: JDY60_RS08375
• Genome accession: NZ_CP066172
• Coordinates: 1746776..1749208 (+)
• Length: 810 a.a.
• NCBI ID: WP_200370645.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SF100
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1741776..1754208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDY60_RS08370 (JDY60_08370)	-	1746316..1746774 (+)	459	WP_001211263.1	CtsR family transcriptional regulator	-
JDY60_RS08375 (JDY60_08375)	clpC	1746776..1749208 (+)	2433	WP_200370645.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
JDY60_RS08380 (JDY60_08380)	-	1749354..1750412 (+)	1059	WP_200370647.1	AAA family ATPase	-
JDY60_RS08385 (JDY60_08385)	pnuC	1750422..1751201 (+)	780	WP_000860150.1	nicotinamide riboside transporter PnuC	-
JDY60_RS08390 (JDY60_08390)	-	1751203..1751976 (+)	774	WP_070695939.1	NUDIX hydrolase	-
JDY60_RS08395 (JDY60_08395)	-	1752026..1752256 (-)	231	WP_200370649.1	hypothetical protein	-
JDY60_RS08400 (JDY60_08400)	-	1752521..1753204 (+)	684	WP_200370651.1	hypothetical protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 90303.15 Da
• Isoelectric Point: 6.0997

>NTDB_id=518090 JDY60_RS08375 WP_200370645.1 1746776..1749208(+) (clpC) [Streptococcus oralis strain SF100]
MNYSKALNECIESAYMVASHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSQDETFTELPF
SHRLEVLFAEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDQKDQVRIAALRRNLEERAGWTREDLKA
LRQRHRTVTDKQNSMANMMGMPQAQSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPAEMVKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGKVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSLADSMTILQGLKATYEKHHRVQITDEAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKSKHVKADESGLSPADKALMDGKWKQAAQLIAKEQEVPVYKDLVTESDI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRIFEELKKTYRPEFINRIDEKVVFHSLDS
EHMQEIVKIMVKPLIASLAEKGIDLKLQASALKLLASQGYNPEMGARPLRRTLQTEVEDKLAELLLKGELVAGKTLKIGV
KAGQLKFDIA

Nucleotide

• Length: 2433 bp

>NTDB_id=518090 JDY60_RS08375 WP_200370645.1 1746776..1749208(+) (clpC) [Streptococcus oralis strain SF100]
ATGAACTATTCAAAAGCATTGAATGAATGTATCGAGAGTGCCTACATGGTTGCGAGCCATTTTGGAGCCCGTTACCTAGA
GTCTTGGCATTTATTGATTGCCATGTCCAATCACAGTTACAGTGTGGCAGGTGCAACTCTAAATGATTATCCTTATGAAA
TGGATCGTTTAGAAGAGGTTGCGTTGGAACTGACTGAAACGGATTATAGCCAAGACGAAACTTTTACGGAATTGCCCTTT
TCCCATCGTTTAGAAGTTCTCTTTGCAGAAGCAGAGTATGTAGCCTCAGTGGTCCACGCAAAGGTGCTAGGGACAGAACA
TGTCCTCTATGCGATCTTGCATGACGGCAATGCCTTGGCAACTCGCATCTTGGAGAGAGCAGGCTTTTCTTATGAAGACC
AGAAAGATCAGGTCAGAATTGCTGCTCTTCGTCGTAATCTAGAAGAGCGTGCAGGATGGACAAGAGAAGATCTCAAGGCT
TTGCGTCAACGTCATCGCACAGTAACTGACAAGCAAAATTCTATGGCCAATATGATGGGCATGCCTCAAGCTCAAAGTGG
CGGTTTAGAGGATTATACTCATGACCTGACGGAGCAAGCGCGTTCTGGCAAGTTAGAGCCAGTTATCGGTCGTGACAAGG
AAATCTCGCGTATGATTCAGATTTTGAGTCGGAAGACCAAGAACAATCCTGTCTTGGTTGGAGATGCGGGTGTCGGGAAA
ACAGCTTTAGCACTTGGGCTTGCCCAGCGTATTGCCAGTGGGGACGTGCCAGCTGAAATGGTCAAGATGCGTGTTCTAGA
GCTTGATTTGATGAATGTCGTTGCAGGGACACGTTTCCGTGGTGACTTTGAAGAGCGTATGAACAACATCATCAAGGATA
TAGAGGAAGATGGCAAAGTGATCCTCTTTATCGATGAACTCCACACCATCATGGGTTCTGGTAGTGGTATTGACTCGACT
CTGGATGCAGCCAATATCTTGAAGCCAGCCTTAGCTCGCGGAACTCTGAGAACAGTTGGTGCAACCACTCAGGAAGAATA
CCAAAAACACATCGAAAAAGATGCTGCCCTTTCTCGTCGTTTTGCAAAAGTGACGATTGAAGAGCCAAGTCTAGCTGACA
GTATGACTATTTTGCAAGGTTTGAAGGCTACCTATGAGAAACACCACCGTGTGCAAATCACAGATGAAGCCGTTGAAACA
GCTGTCAAGATGGCGCATCGTTACTTGACTAGTCGTCACTTACCAGACTCTGCCATCGATCTATTGGATGAAGCGGCAGC
AACCGTTCAAAACAAATCCAAGCATGTGAAAGCAGACGAATCCGGCTTGAGTCCAGCTGACAAGGCTCTGATGGATGGCA
AGTGGAAACAAGCGGCCCAGCTAATCGCAAAGGAGCAGGAAGTTCCTGTCTATAAAGACTTGGTGACAGAATCTGATATT
TTAACCACTTTGAGCCGCTTGTCAGGGATTCCAGTTCAAAAACTGACGCAGACTGACGCCAAGAAATACCTGAACTTGGA
AGCTGAACTACACAAACGTGTCATCGGTCAAGATCAAGCTGTTTCAAGCATTAGCCGTGCGATTCGTCGCAATCAGTCAG
GTATTCGCAGTCACAAGCGTCCAATTGGTTCCTTTATGTTCCTAGGGCCGACAGGAGTCGGTAAGACCGAATTGGCAAAG
GCTCTGGCAGAAGTTCTCTTTGATGACGAATCAGCCCTTATCCGCTTTGATATGAGTGAGTATATGGAGAAATTTGCGGC
TAGCCGTCTCAATGGAGCCCCTCCTGGCTATGTAGGCTACGAAGAAGGTGGGGAGCTGACTGAGAAGGTTCGCAACAAAC
CATACTCCGTTCTCCTCTTTGACGAGGTAGAGAAGGCTCACCCAGATATCTTTAATGTTCTCTTGCAGGTTCTGGACGAC
GGTGTTTTGACAGATAGCAAGGGGCGCAAGGTGGACTTTTCAAATACCATTATCATCATGACGTCAAACCTTGGTGCGAC
GGCTCTTCGTGATGACAAGACTGTTGGCTTTGGCGCGAAAGACATTCGTTTTGACCAGGAAAATATGGAAAAACGAATCT
TTGAAGAGTTGAAAAAAACTTATCGACCAGAGTTTATCAACCGTATTGATGAAAAGGTGGTTTTCCACAGTTTGGATAGC
GAACACATGCAAGAAATTGTCAAGATTATGGTGAAACCATTGATTGCTAGCCTGGCAGAGAAGGGTATCGACCTGAAACT
GCAAGCTTCAGCCCTGAAGTTGCTAGCTAGCCAAGGTTACAATCCAGAAATGGGAGCTCGCCCACTTCGCAGAACCCTGC
AAACAGAAGTGGAGGACAAGTTGGCAGAACTTCTTCTTAAGGGAGAATTAGTGGCAGGCAAGACTCTCAAGATTGGTGTC
AAAGCAGGTCAATTAAAATTTGATATTGCTTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (371-439)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (718-797)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-362)

• AAA domain (Cdc48 subfamily) (AAA_2) (540-711)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (103-133)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	96.543	100	0.965
clpC	Streptococcus pneumoniae D39	96.543	100	0.965
clpC	Streptococcus pneumoniae TIGR4	96.543	100	0.965
clpC	Streptococcus mutans UA159	67.528	100	0.678
clpC	Streptococcus thermophilus LMD-9	66.83	100	0.672
clpC	Streptococcus thermophilus LMG 18311	66.708	100	0.67
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.333	100	0.502
clpC	Bacillus subtilis subsp. subtilis str. 168	44.951	100	0.451
clpE	Streptococcus mutans UA159	48.548	76.543	0.372
clpC	Lactococcus lactis subsp. cremoris KW2	46.73	77.407	0.362