Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   JDY60_RS08130 Genome accession   NZ_CP066172
Coordinates   1692607..1693365 (-) Length   252 a.a.
NCBI ID   WP_200370607.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687607..1698365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS08105 (JDY60_08105) pth 1687632..1688201 (-) 570 WP_000163918.1 aminoacyl-tRNA hydrolase -
  JDY60_RS08110 (JDY60_08110) ychF 1688275..1689390 (-) 1116 WP_001218702.1 redox-regulated ATPase YchF -
  JDY60_RS08115 (JDY60_08115) - 1689475..1689669 (-) 195 WP_000285184.1 DUF951 domain-containing protein -
  JDY60_RS08120 (JDY60_08120) dnaN 1689734..1690870 (-) 1137 WP_000581146.1 DNA polymerase III subunit beta -
  JDY60_RS08125 (JDY60_08125) dnaA 1691029..1692390 (-) 1362 WP_000660625.1 chromosomal replication initiator protein DnaA -
  JDY60_RS08130 (JDY60_08130) spo0J 1692607..1693365 (-) 759 WP_200370607.1 ParB/RepB/Spo0J family partition protein Regulator
  JDY60_RS08135 (JDY60_08135) htrA 1693423..1694619 (-) 1197 WP_000681800.1 S1C family serine protease Regulator
  JDY60_RS08140 (JDY60_08140) rlmH 1694805..1695284 (+) 480 WP_200370609.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  JDY60_RS08150 (JDY60_08150) comC/comC2 1695566..1695691 (+) 126 WP_000799678.1 competence-stimulating peptide ComC Regulator
  JDY60_RS08155 (JDY60_08155) comD 1695712..1697031 (+) 1320 WP_000362886.1 competence system sensor histidine kinase ComD Regulator
  JDY60_RS08160 (JDY60_08160) comE 1697028..1697780 (+) 753 WP_200370611.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29052.51 Da        Isoelectric Point: 8.2862

>NTDB_id=518082 JDY60_RS08130 WP_200370607.1 1692607..1693365(-) (spo0J) [Streptococcus oralis strain SF100]
MEKFEMISISEIQKNPYQPRKEFDVDKIKELAQSIKENGLIQPIIVRQSPVIGYEILAGERRYRASLLAGLTSIPAVVKH
LSDQEMMIQSIIENLQRENLNPVEEARAYESLVEKGFTHTEIADKMGKSRPYITNFIRLLSLPEYILTEVENGKISQAHA
RSLVGLDKEQQDYFFQLIKNEDISVRKLEALLTDKKHKKQKKSDSFIKDEENQLKKLLGLSVEIKLSKKDTGKIIISFSS
QEEYDRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=518082 JDY60_RS08130 WP_200370607.1 1692607..1693365(-) (spo0J) [Streptococcus oralis strain SF100]
ATGGAAAAATTTGAAATGATTTCTATCTCTGAAATACAAAAGAATCCTTACCAACCTCGAAAAGAATTTGATGTAGATAA
AATAAAGGAATTAGCTCAGTCAATCAAAGAAAATGGGCTCATCCAACCAATCATCGTTCGTCAATCTCCTGTAATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGATATCGTGCTTCTCTCTTAGCTGGTCTTACTTCTATTCCAGCCGTTGTAAAGCAC
CTCTCAGATCAGGAAATGATGATCCAATCTATCATTGAGAATTTGCAGAGAGAAAATTTAAATCCTGTTGAAGAAGCACG
CGCCTACGAATCTTTAGTAGAAAAAGGATTTACTCACACTGAGATAGCGGATAAAATGGGGAAATCTCGTCCTTATATCA
CTAATTTTATTCGTTTGCTTTCCCTACCAGAATATATCTTAACTGAAGTAGAAAATGGAAAAATTTCTCAAGCGCATGCA
CGTTCACTTGTTGGTTTGGATAAAGAGCAGCAAGACTATTTCTTCCAACTAATCAAAAATGAAGATATTTCTGTGAGAAA
GTTAGAAGCACTTCTTACAGATAAAAAACACAAGAAGCAAAAAAAAAGTGATTCTTTCATCAAAGACGAAGAAAATCAAT
TAAAAAAACTACTCGGTTTAAGTGTAGAAATTAAACTTTCAAAAAAAGATACTGGAAAGATTATTATCTCCTTTTCAAGT
CAAGAAGAATACGATAGAATTATTAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(145-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504