Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   JDY60_RS05990 Genome accession   NZ_CP066172
Coordinates   1249504..1249797 (-) Length   97 a.a.
NCBI ID   WP_101800194.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1244504..1254797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS05980 (JDY60_05980) metF 1246033..1246899 (-) 867 WP_025168823.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  JDY60_RS05985 (JDY60_05985) metE 1246994..1249243 (-) 2250 WP_200370312.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  JDY60_RS05990 (JDY60_05990) HI0659 1249504..1249797 (-) 294 WP_101800194.1 helix-turn-helix domain-containing protein Machinery gene
  JDY60_RS05995 (JDY60_05995) - 1249787..1250153 (-) 367 Protein_1172 type II toxin-antitoxin system RelE/ParE family toxin -
  JDY60_RS06000 (JDY60_06000) - 1250310..1250675 (-) 366 WP_101800195.1 TIGR02328 family protein -
  JDY60_RS06005 (JDY60_06005) - 1250659..1251063 (-) 405 WP_200371624.1 YbgA family protein -
  JDY60_RS06010 (JDY60_06010) - 1251083..1251355 (-) 273 Protein_1175 HigA family addiction module antitoxin -
  JDY60_RS06015 (JDY60_06015) - 1251719..1252378 (-) 660 WP_200370316.1 phospholipase D-like domain-containing protein -
  JDY60_RS06020 (JDY60_06020) drmB 1252360..1254117 (-) 1758 WP_200370318.1 DUF1998 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10786.43 Da        Isoelectric Point: 5.1991

>NTDB_id=518054 JDY60_RS05990 WP_101800194.1 1249504..1249797(-) (HI0659) [Streptococcus oralis strain SF100]
MKNSAIGSNWKDIRSELFTKEEIFESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=518054 JDY60_RS05990 WP_101800194.1 1249504..1249797(-) (HI0659) [Streptococcus oralis strain SF100]
ATGAAAAATAGCGCCATTGGGAGTAATTGGAAAGATATCCGATCTGAACTCTTTACCAAGGAGGAAATCTTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGTTGATAGAAGCTAGACATGAGCAAGGTATCAGTCAGAAAAAACTAGAAGAACTCA
GTGGAGTGAGCCAGCCTGTTATAGCTAGGATGGAGACAGGAAAGACCAGTCCTCAGTTGGATACGGTCTTAAAAGTCTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTACCACTTGAACAGGAAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557