Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   JDY60_RS00495 Genome accession   NZ_CP066172
Coordinates   133340..134071 (+) Length   243 a.a.
NCBI ID   WP_200370899.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 128340..139071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS00475 (JDY60_00475) dnaK 128763..130586 (+) 1824 WP_125391705.1 molecular chaperone DnaK -
  JDY60_RS00480 (JDY60_00480) dnaJ 130989..132125 (+) 1137 WP_001066307.1 molecular chaperone DnaJ -
  JDY60_RS00485 (JDY60_00485) - 132565..132852 (-) 288 WP_200370897.1 hypothetical protein -
  JDY60_RS00490 (JDY60_00490) - 132862..133272 (-) 411 WP_007519264.1 HIT family protein -
  JDY60_RS00495 (JDY60_00495) pptA 133340..134071 (+) 732 WP_200370899.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS00500 (JDY60_00500) - 134068..135117 (+) 1050 WP_125389402.1 ABC transporter permease -
  JDY60_RS00505 (JDY60_00505) ccrZ 135165..135959 (+) 795 WP_000363019.1 cell cycle regulator CcrZ -
  JDY60_RS00510 (JDY60_00510) trmB 135956..136591 (+) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JDY60_RS00515 (JDY60_00515) rimP 136718..137197 (+) 480 WP_000338692.1 ribosome maturation factor RimP -
  JDY60_RS00520 (JDY60_00520) nusA 137240..138376 (+) 1137 WP_000032278.1 transcription termination factor NusA -
  JDY60_RS00525 (JDY60_00525) rnpM 138398..138691 (+) 294 WP_000857560.1 RNase P modulator RnpM -
  JDY60_RS00530 (JDY60_00530) - 138684..138983 (+) 300 WP_200370901.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27229.67 Da        Isoelectric Point: 4.6364

>NTDB_id=518030 JDY60_RS00495 WP_200370899.1 133340..134071(+) (pptA) [Streptococcus oralis strain SF100]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTLREDATSYRKQIGYIP
ETPSLYEELTLREYIETVAMAYGIEQKVAFDRVESLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAQGNLQQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=518030 JDY60_RS00495 WP_200370899.1 133340..134071(+) (pptA) [Streptococcus oralis strain SF100]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATGTTCACGTTCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACAATCAATGAGATTATTGGACTGTTGACACCTT
ACAGTGGAGAAATCAAGATTAATGGTCTCACCCTGCGAGAAGATGCGACCAGCTATCGCAAGCAGATTGGGTATATCCCA
GAAACGCCTAGCTTGTATGAAGAATTGACCCTCAGAGAGTATATCGAGACGGTGGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTTGATCGTGTGGAATCTTTGTTAAAAATGTTCCGCCTGGACCAAAAATTAGACTGGTTCCCAGTGCATTTCT
CCAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTCGTAGATCCGAGCCTTTTCATCGTTGATGAGCCTTTC
CTTGGGCTCGATCCGCTGGCCATTTCTGACTTGATCCAGCTACTAGAAGTGGAAAAGCAAAAAGGCAAGTCTATCCTCAT
GAGTACCCACGTGCTAGACTCAGCGGAAAAGATGTGTGATGCCTTTGTCATTCTCCACAAGGGGGAGGTACGGGCTCAGG
GGAACCTCCAGCAACTCCGCGAAGCCTTTGACATGCCTGAAGCGAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712