Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JDY60_RS00085 Genome accession   NZ_CP066172
Coordinates   14549..16309 (+) Length   586 a.a.
NCBI ID   WP_200370836.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 182..16309 14549..16309 within 0


Gene organization within MGE regions


Location: 182..16309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS00010 (JDY60_00010) - 182..733 (+) 552 WP_015971686.1 hypothetical protein -
  JDY60_RS00015 (JDY60_00015) - 736..1047 (+) 312 WP_015971687.1 hypothetical protein -
  JDY60_RS00020 (JDY60_00020) - 1062..1442 (+) 381 WP_015971688.1 DUF5361 domain-containing protein -
  JDY60_RS00025 (JDY60_00025) - 1442..4465 (+) 3024 WP_015971689.1 PblA -
  JDY60_RS00030 (JDY60_00030) - 4465..5160 (+) 696 WP_015971690.1 hypothetical protein -
  JDY60_RS00035 (JDY60_00035) - 5157..8345 (+) 3189 WP_015971691.1 phage tail spike protein -
  JDY60_RS00040 (JDY60_00040) - 8342..8551 (+) 210 WP_015971692.1 hypothetical protein -
  JDY60_RS00045 (JDY60_00045) - 8541..9188 (+) 648 WP_015971693.1 hypothetical protein -
  JDY60_RS00050 (JDY60_00050) - 9205..9621 (+) 417 WP_015971694.1 hypothetical protein -
  JDY60_RS00055 (JDY60_00055) - 9608..9940 (+) 333 WP_015971695.1 phage holin -
  JDY60_RS00060 (JDY60_00060) - 9943..10830 (+) 888 WP_015971696.1 peptidoglycan amidohydrolase family protein -
  JDY60_RS00065 (JDY60_00065) - 11016..11288 (+) 273 WP_200370834.1 hypothetical protein -
  JDY60_RS00070 (JDY60_00070) - 11448..12152 (-) 705 WP_200370835.1 CD20-like domain-containing protein -
  JDY60_RS00075 (JDY60_00075) - 12345..12806 (+) 462 WP_000360526.1 MarR family winged helix-turn-helix transcriptional regulator -
  JDY60_RS00080 (JDY60_00080) rcrP 12790..14559 (+) 1770 WP_129313488.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS00085 (JDY60_00085) rcrQ 14549..16309 (+) 1761 WP_200370836.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64496.16 Da        Isoelectric Point: 5.1159

>NTDB_id=518029 JDY60_RS00085 WP_200370836.1 14549..16309(+) (rcrQ) [Streptococcus oralis strain SF100]
MENKKVSVWKQCKPYMAGLQLPLLIAVVAAVISSIITVYGPTKIKEITNLISDGLATEIDLVAVSNIAGFLVVLYVFGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGAVLSASFLLIAVLVTM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFAGLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVLE
FLAEAEMQDESHKERQLSNIKGEVVFDHVSFGYTLERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRDNLVYNQTDISDERMIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=518029 JDY60_RS00085 WP_200370836.1 14549..16309(+) (rcrQ) [Streptococcus oralis strain SF100]
ATGGAAAATAAAAAAGTTTCGGTCTGGAAACAGTGCAAACCTTATATGGCAGGCCTCCAACTCCCTCTCCTAATAGCAGT
TGTGGCTGCAGTCATTTCAAGTATCATTACCGTTTATGGTCCAACTAAGATTAAAGAAATTACTAACTTGATTTCAGATG
GCTTGGCTACAGAAATCGACTTGGTAGCTGTGTCAAACATTGCTGGATTTTTGGTTGTTCTATATGTATTTGGCGCCATC
CTTAACTATACACAGGCCTATATCTTTTCAACAAGTATCCAACATTTTTCAAAACGCTTGCGGACAGCAATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGCCATTCACAAGGAGACACTCTATCTCGTGTGACCAACGATGTGGATA
CGGCGGCGCAATCTCTCAACCAAAGTCTAGGGGCAGTTCTTTCAGCTAGTTTCTTGTTGATTGCTGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTGGCATTGGTAACAGTTGTATCAACCCTTGTTGGTTTTGCGGCGGTTTCCGTAATCATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCAGCCGTCAATGGTTATGTGGAAGAGATGTACTCTGGCC
ATAATGTAGTGACCAGCTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCAGGTTTAAACCAAGACTTGCATGATAGT
ATTTGGAAATCTCAGTTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGGAACTTTAGTTATGTCTTAGTCAT
CATCGTTGGGGCCGCGCTGGCGTTAGAAGGACATATCACGATAGGGATTATTGTAGCTTTTATGGTTTACGTACGGACCT
TCTCCCAACCTCTGTCACAGATTGCCCAAGGGATTACGAGCTTGCAACAAGCGAGTGCAGCCATGACTCGTGTATTAGAA
TTTCTAGCTGAAGCTGAGATGCAGGATGAATCTCATAAGGAAAGACAATTGAGCAACATAAAAGGGGAAGTAGTCTTTGA
TCATGTGTCATTTGGCTATACACTAGAGCGCACCATCATCCATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTCG
CGATCGTTGGGCCGACTGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTTTATGAGATTGATAAGGGAAGT
ATCCGTATCGATGGTGTGGATACTAAGGACATGAAACGCTCAGAAGTACATGATGCCTTTTCAATGGTCTTGCAGGACAC
ATGGCTCTTTGAAGGAACCATTCGAGACAATCTCGTCTATAATCAGACAGACATCAGTGATGAACGAATGATAGAAGCCA
GTAAGGCTGTGGGAATCCACCACTTTATCATGACTTTGCCAGATGGCTACGATACTGTTTTGGATGACACCGTGACCTTG
TCTGTTGGACAGAAACAGCTCTTGACCATTGCTCGTGCCTTGCTCAAGGACGCGCCACTCTTGATTTTGGATGAAGCGAC
ATCCTCAGTCGACACACGTACAGAGGAGTTGATTCAAAAAGCCATGGACCGTTTGATGGAGGGTCGAACTTCCTTTGTCA
TTGCCCACCGCTTGTCTACTATCCGAAATGCCGACTTGATTCTTGTCATGAAAGATGGAAATATCATTGAACAAGGCAAC
CATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCCGACTTGTACAATAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.61

99.659

0.664