Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JDY60_RS00080 Genome accession   NZ_CP066172
Coordinates   12790..14559 (+) Length   589 a.a.
NCBI ID   WP_129313488.1    Uniprot ID   A0A4Q2FMD5
Organism   Streptococcus oralis strain SF100     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 182..16309 12790..14559 within 0


Gene organization within MGE regions


Location: 182..16309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS00010 (JDY60_00010) - 182..733 (+) 552 WP_015971686.1 hypothetical protein -
  JDY60_RS00015 (JDY60_00015) - 736..1047 (+) 312 WP_015971687.1 hypothetical protein -
  JDY60_RS00020 (JDY60_00020) - 1062..1442 (+) 381 WP_015971688.1 DUF5361 domain-containing protein -
  JDY60_RS00025 (JDY60_00025) - 1442..4465 (+) 3024 WP_015971689.1 PblA -
  JDY60_RS00030 (JDY60_00030) - 4465..5160 (+) 696 WP_015971690.1 hypothetical protein -
  JDY60_RS00035 (JDY60_00035) - 5157..8345 (+) 3189 WP_015971691.1 phage tail spike protein -
  JDY60_RS00040 (JDY60_00040) - 8342..8551 (+) 210 WP_015971692.1 hypothetical protein -
  JDY60_RS00045 (JDY60_00045) - 8541..9188 (+) 648 WP_015971693.1 hypothetical protein -
  JDY60_RS00050 (JDY60_00050) - 9205..9621 (+) 417 WP_015971694.1 hypothetical protein -
  JDY60_RS00055 (JDY60_00055) - 9608..9940 (+) 333 WP_015971695.1 phage holin -
  JDY60_RS00060 (JDY60_00060) - 9943..10830 (+) 888 WP_015971696.1 peptidoglycan amidohydrolase family protein -
  JDY60_RS00065 (JDY60_00065) - 11016..11288 (+) 273 WP_200370834.1 hypothetical protein -
  JDY60_RS00070 (JDY60_00070) - 11448..12152 (-) 705 WP_200370835.1 CD20-like domain-containing protein -
  JDY60_RS00075 (JDY60_00075) - 12345..12806 (+) 462 WP_000360526.1 MarR family winged helix-turn-helix transcriptional regulator -
  JDY60_RS00080 (JDY60_00080) rcrP 12790..14559 (+) 1770 WP_129313488.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS00085 (JDY60_00085) rcrQ 14549..16309 (+) 1761 WP_200370836.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65266.56 Da        Isoelectric Point: 5.5689

>NTDB_id=518028 JDY60_RS00080 WP_129313488.1 12790..14559(+) (rcrP) [Streptococcus oralis strain SF100]
MKKLAKRIIGKEWGMIVLTILFTCFSVYLELEVPTYISQITELLGTSGTQLGELWSPAAKMMGLSLLAFMSSVAVGFFAS
HVAASYTTHLRSDIFNRVLDFSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTVLMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMAISSGLTLAIYWIGAYIINDASLTERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHAQTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSQESPLSEAAMWQALELAQSKAFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=518028 JDY60_RS00080 WP_129313488.1 12790..14559(+) (rcrP) [Streptococcus oralis strain SF100]
ATGAAGAAACTCGCTAAACGTATTATAGGAAAAGAGTGGGGAATGATCGTCCTTACGATTCTTTTCACTTGTTTCTCGGT
CTATCTCGAGTTAGAGGTACCGACCTACATTTCGCAAATTACAGAGTTACTGGGAACGTCTGGAACGCAGTTGGGTGAAC
TCTGGTCACCAGCTGCGAAGATGATGGGATTATCTCTCCTTGCCTTTATGTCGTCAGTAGCAGTTGGATTTTTCGCCTCC
CATGTTGCAGCGTCTTACACGACTCACTTGAGAAGCGATATTTTTAATCGAGTACTGGATTTTTCACAGACAGAGATTAA
ACGTTTTTCAATCCCCAGTCTTTTGACTCGGACGACCAATGATATCACACAGGTACAGATGCTCTTTACCATGGGATTAC
AGGTAGTGACTCGTGGGCCGATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGTAAGTCCGAATACTGGCTCTGGGCA
GTCGTTGTGGCTGTTATTGTGAATGTCTTGATGACCACCGTTCTCATGACTCTGGCCTTTCCAAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGCTTGACAGGGATTCGGGTTGTTCGTGCTTATAATGCTGAGG
ATTACCAAGATGAGAAATTTGAAGCAGCCAATGATGAAGTGACGCGTCTCAATCTCTTTGTCAATCGATTGATGGCGATT
ATGAACCCGATTATGATGGCAATTTCCAGTGGTTTGACCTTAGCTATTTACTGGATTGGTGCCTATATCATCAACGATGC
AAGTTTGACAGAACGTCTGCCACTCTTTAGTGATATGGTGGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGCTTCC
TTCTCATGGGAGCACTCTTTATCGTTCTTCCTCGTACCTTGGTTTCGGCAGGACGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATGCCCAGACAGCGGATCCTTCAGTTCAAGGACAAGTGGAATTCCGTGATGTGACTTT
CCGCTACTCTAAAAACTCAGAAGCAGTCGTGGAACATGTCACTTTCAAAGCAGAAGCGGGTCAAACCGTAGCCTTCATCG
GATCGACTGGATCAGGTAAGTCTACACTTGTCAACCTCTTGCCACGTTTTTACGACGTTTCTGATGGAGAAATCCTAGTG
GACGGAGTTAATGTGCAAGATTACGATTTGGAAGATTTGCGCAATAAGGTCGGCTATATTCCACAAAAAGCTGTACTCTT
TTCTGGAGATGTCAAGGGGAACTTGGACTTTGGTAAGAGTCAAGAAAGTCCTCTAAGTGAGGCTGCTATGTGGCAAGCTC
TTGAATTGGCCCAGTCTAAAGCATTTATCGAGGACAAGGAAGCAGGTCTTGCATCAGAAGTAGCCCAAGGTGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTGGCCATTGCACGCGCCTTGGCTCGTAAACCAGAGATTCTCATCTTTGATGATTC
CTTCTCAGCCTTGGACTACAAGACAGATCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAATCCATGACCAAACTCA
TCGTAGCGCAACGGATTTCTACCATTATGGACGCCGACCTGATCTTAGTTTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCAACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCAAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q2FMD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.724

100

0.671