Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZY09_RS13095 Genome accession   NZ_CP080172
Coordinates   2655761..2657188 (+) Length   475 a.a.
NCBI ID   WP_072149496.1    Uniprot ID   -
Organism   Escherichia coli strain PK8566     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650761..2662188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY09_RS13060 (KZY09_13040) - 2651067..2651522 (+) 456 WP_000581504.1 IrmA family protein -
  KZY09_RS13065 (KZY09_13045) - 2651635..2651772 (-) 138 Protein_2581 transposase domain-containing protein -
  KZY09_RS13070 (KZY09_13050) - 2651801..2651935 (+) 135 WP_001297944.1 EutP/PduV family microcompartment system protein -
  KZY09_RS13075 (KZY09_13055) tmaR 2652036..2652365 (-) 330 WP_000450409.1 DUF496 family protein -
  KZY09_RS13080 (KZY09_13060) yeeA 2652537..2653595 (-) 1059 WP_001200891.1 FUSC family protein -
  KZY09_RS13085 (KZY09_13065) sbmC 2653794..2654267 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  KZY09_RS13090 (KZY09_13070) dacD 2654386..2655552 (-) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZY09_RS13095 (KZY09_13075) sbcB 2655761..2657188 (+) 1428 WP_072149496.1 exodeoxyribonuclease I Machinery gene
  KZY09_RS13100 (KZY09_13080) tsuB 2657231..2657458 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZY09_RS13105 (KZY09_13085) tsuA 2657472..2658530 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KZY09_RS13110 (KZY09_13090) plaP 2658709..2660067 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZY09_RS13115 (KZY09_13095) yoeI 2660057..2660119 (-) 63 WP_010723108.1 membrane protein YoeI -
  KZY09_RS13120 (KZY09_13100) yeeY 2660334..2661284 (-) 951 WP_105078013.1 LysR substrate-binding domain-containing protein -
  KZY09_RS13125 (KZY09_13105) yeeZ 2661309..2662133 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54375.66 Da        Isoelectric Point: 5.3434

>NTDB_id=518022 KZY09_RS13095 WP_072149496.1 2655761..2657188(+) (sbcB) [Escherichia coli strain PK8566]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAACIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=518022 KZY09_RS13095 WP_072149496.1 2655761..2657188(+) (sbcB) [Escherichia coli strain PK8566]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCTGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581