Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SSIL_RS02070 Genome accession   NC_018065
Coordinates   411174..412130 (+) Length   318 a.a.
NCBI ID   WP_008405843.1    Uniprot ID   F2F6A1
Organism   Solibacillus silvestris StLB046     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406174..417130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSIL_RS02055 (SSIL_0369) - 407017..408501 (+) 1485 WP_014822508.1 peptide MFS transporter -
  SSIL_RS02060 (SSIL_0370) - 408903..409736 (+) 834 WP_014822509.1 GNAT family N-acetyltransferase -
  SSIL_RS02065 (SSIL_0371) menC 409787..410896 (+) 1110 WP_014822510.1 o-succinylbenzoate synthase -
  SSIL_RS02070 (SSIL_0372) ceuB 411174..412130 (+) 957 WP_008405843.1 ABC transporter permease Machinery gene
  SSIL_RS02075 (SSIL_0373) - 412117..413073 (+) 957 WP_014822511.1 iron chelate uptake ABC transporter family permease subunit -
  SSIL_RS02080 (SSIL_0374) - 413070..413837 (+) 768 WP_008405841.1 ABC transporter ATP-binding protein -
  SSIL_RS02085 (SSIL_0375) - 414022..415059 (+) 1038 WP_014822512.1 siderophore ABC transporter substrate-binding protein -
  SSIL_RS02090 (SSIL_0376) - 415124..415456 (+) 333 WP_014822513.1 antibiotic biosynthesis monooxygenase family protein -
  SSIL_RS02095 (SSIL_0377) - 415576..416169 (+) 594 WP_014822514.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34898.16 Da        Isoelectric Point: 9.5449

>NTDB_id=51792 SSIL_RS02070 WP_008405843.1 411174..412130(+) (ceuB) [Solibacillus silvestris StLB046]
MRLWMLVVATIVLSFLSLFIGAIDIKPSDLLDWDSDKMQIFLMSRVPRLMAIILAGAGMGISGLIMQSLSRNKFVSPTTS
GTLDAAKLGIVVSMIFFTSVGYMEKIIFSFTFALIGMMVFMRLLESIKFKDVIFVPLIGIMYGNIIGAISTFLAYEADVL
QSVDTFFLGSFTLVVSGRYELLYVAVPAIFLAYLYANKFTVAGMGEDFAKNLGLSYRTVLNLGLVLVAIISTTVVLTVGI
IPFLGLIVPNLVSLYMGDNLRKTIPHTIFLGAAFLLMCDILSRLIVYPFEIPVNTTVAVIGSAIFLVMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=51792 SSIL_RS02070 WP_008405843.1 411174..412130(+) (ceuB) [Solibacillus silvestris StLB046]
ATGAGACTTTGGATGCTCGTAGTAGCGACCATCGTCCTGTCCTTTTTATCATTGTTTATTGGAGCTATCGACATTAAGCC
ATCTGATTTATTGGATTGGGATTCAGATAAAATGCAAATTTTCTTAATGAGTCGAGTACCGCGATTAATGGCAATTATAC
TTGCTGGGGCAGGGATGGGTATTTCAGGATTAATTATGCAAAGCTTAAGCCGTAACAAATTCGTATCGCCGACAACGTCT
GGTACGCTTGATGCGGCAAAGCTAGGTATTGTTGTATCAATGATATTTTTTACAAGTGTTGGGTATATGGAGAAAATTAT
ATTCAGTTTTACATTTGCACTGATCGGTATGATGGTTTTCATGCGTCTTCTTGAAAGCATTAAATTCAAGGACGTTATTT
TTGTACCTCTTATCGGGATTATGTATGGGAATATTATTGGTGCCATTTCAACATTTCTTGCGTATGAGGCGGATGTGCTG
CAAAGTGTAGATACATTCTTTCTAGGAAGTTTTACACTTGTTGTATCAGGTCGCTATGAATTGCTTTATGTAGCGGTGCC
TGCAATTTTCCTTGCGTATTTATATGCCAATAAGTTTACAGTTGCTGGCATGGGTGAAGATTTCGCCAAAAATCTTGGCT
TAAGCTATCGTACCGTATTGAATCTTGGTTTAGTACTAGTAGCGATTATTTCCACTACAGTTGTCTTAACGGTAGGGATT
ATACCTTTCCTAGGATTAATCGTACCGAACTTGGTTTCATTATATATGGGAGACAATTTACGTAAAACAATTCCGCATAC
AATCTTCTTAGGTGCAGCATTCCTATTAATGTGTGATATTTTAAGTCGTTTAATTGTATACCCGTTTGAAATTCCCGTAA
ACACAACGGTTGCGGTAATCGGCAGTGCGATCTTCTTAGTAATGTTATTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2F6A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.371

0.503

Multiple sequence alignment