Detailed information NTG0517894

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ITG10_RS15180
• Genome accession: NZ_CP066149
• Coordinates: 3371076..3372500 (-)
• Length: 474 a.a.
• NCBI ID: WP_017629974.1
• Uniprot ID: -
• Organism: Vibrio sp. ED004
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3366076..3377500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG10_RS15155 (ITG10_15055)	-	3366699..3367352 (+)	654	WP_017629977.1	thiopurine S-methyltransferase	-
ITG10_RS15160 (ITG10_15060)	purT	3367483..3368658 (-)	1176	WP_248386476.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ITG10_RS15165 (ITG10_15065)	cdd	3368826..3369713 (-)	888	WP_017629976.1	cytidine deaminase	-
ITG10_RS15170 (ITG10_15070)	-	3370000..3370677 (-)	678	WP_017629975.1	LrgB family protein	-
ITG10_RS15175 (ITG10_15075)	-	3370680..3371051 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
ITG10_RS15180 (ITG10_15080)	sbcB	3371076..3372500 (-)	1425	WP_017629974.1	exodeoxyribonuclease I	Machinery gene
ITG10_RS15185 (ITG10_15085)	-	3373400..3373834 (+)	435	WP_017629744.1	DUF4402 domain-containing protein	-
ITG10_RS15190 (ITG10_15090)	-	3373887..3374324 (+)	438	WP_017629745.1	DUF4402 domain-containing protein	-
ITG10_RS15195 (ITG10_15095)	-	3374321..3375031 (+)	711	WP_017629746.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54796.03 Da
• Isoelectric Point: 4.7410

>NTDB_id=517894 ITG10_RS15180 WP_017629974.1 3371076..3372500(-) (sbcB) [Vibrio sp. ED004]
MSSDNQPTYFFFDYETWGVSPAEDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRDRLYTKRSELNEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHENESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=517894 ITG10_RS15180 WP_017629974.1 3371076..3372500(-) (sbcB) [Vibrio sp. ED004]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCGGAAGATCGTCCGAG
TCAATTCGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAACCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTTCCTGCACCTGAAGCTGCGCTGATCACTCGCATCACACCACAAAAAGCCATGTCTCAAGGCCTACCTGAGCCT
GAGTTTATTGCCAAGATTCATGCAGAGCTTGCAAAGCCAAACACCACAAGCCTTGGCTACAACAGCATTCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGCAACTTCATTGACCCGTACGCATGGAGCTGGCAAAACGGCAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACACGCACTTCGCCCTGAAGGTATAGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACTATTGAATTAGCGAAAAAGCTGAAAGCTGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAACGCA
AGTTGAATGAATTAGTCGACATCGTAAACATGACACCTTTAATGCACGTGTCAGGTATGTTTGGTCGTGATTGTAATTAC
ACAAGCTGGATTGTGCCGATGGCTTGGCATCCAACCAACCAAAACGCCGTTATCGTGGTGGACTTAGCGAAAGATCCTAG
CCCACTGCTTGAGCTAGATACTGATGAGCTAAGAGACAGGCTCTACACCAAACGCAGCGAGCTAAATGAAGATGAGTTGC
CAGTCCCAATTAAGCTGGTACAACTCAACAAGTGCCCTATTCTCGCACCAGCAAAAACACTCACGGCTGAAAACGCGGAA
ACGATCGGCATTGACCGTCAGCAGTGTTTGAAGAACCTTGCACTATTACGTGAACATCCAGAGATTCGTGAAAAGCTGAT
TGGCTTGTACTCACAAGAACGTGAATACGAAAAAAGCGATGATGTAGACACACACCTTTACGATGGCTTCTTCTCTCCGG
CAGATAAGACCGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCCGCTTTGGACATCACTTTCAGCGACGAA
CGCATTAAACCGTTGTTGTTCCGTTACCGCGCTCGTCATTTCCCATGGACACTTGATGAAGCTGAGCAACTAAAATGGGC
GAACCATTGTCGTGAGTTTTACGAGAGTCGCTTAGAAGAGTACATGCTGAATCTAGAAAACCTCGCACATGAAAACGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAGTACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.321	99.789	0.762