Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ITG10_RS15095 Genome accession   NZ_CP066149
Coordinates   3353961..3355142 (-) Length   393 a.a.
NCBI ID   WP_017630364.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3348961..3360142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS15085 (ITG10_14985) - 3350654..3351517 (+) 864 WP_017630365.1 AraC family transcriptional regulator -
  ITG10_RS15090 (ITG10_14990) - 3351761..3353809 (+) 2049 WP_248386475.1 hybrid sensor histidine kinase/response regulator -
  ITG10_RS15095 (ITG10_14995) cqsA 3353961..3355142 (-) 1182 WP_017630364.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ITG10_RS15100 (ITG10_15000) - 3355401..3356789 (-) 1389 WP_017630363.1 PLP-dependent aminotransferase family protein -
  ITG10_RS15105 (ITG10_15005) - 3356893..3357807 (+) 915 WP_017630362.1 EamA family transporter -
  ITG10_RS15110 (ITG10_15010) - 3358074..3358946 (+) 873 WP_017630361.1 aspartoacylase -
  ITG10_RS15115 (ITG10_15015) - 3359043..3360041 (-) 999 WP_017630360.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.70 Da        Isoelectric Point: 6.3853

>NTDB_id=517893 ITG10_RS15095 WP_017630364.1 3353961..3355142(-) (cqsA) [Vibrio sp. ED004]
MSDKTKNKPLPSFIEERLSFYIQDLITQNQSQKHLVLGKRPSRDSVVMQSNDYLSLSHNKAIQQAHQSAISDHDDNVVMS
AIFLQDAESKPAFESELANYVGMESCLLSQSGWAANIGLLQTVCPPNTPVYIDFFAHMSLWEGIRAAGATAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQAFDCAVIVDESHSLGTHGEKGAGLVQALGLTDQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKREALFKRAQSLITGLKRIGFNIRSESQ
IVSLECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYRHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=517893 ITG10_RS15095 WP_017630364.1 3353961..3355142(-) (cqsA) [Vibrio sp. ED004]
ATGAGTGATAAAACCAAAAACAAACCATTACCTTCCTTTATTGAAGAACGCTTGAGCTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAACACTTGGTGTTGGGTAAACGTCCATCGCGCGACTCCGTTGTCATGCAGAGCAATGATTATT
TGTCTTTGTCACACAACAAAGCAATCCAACAAGCCCACCAATCGGCGATCAGCGACCACGACGACAATGTGGTGATGTCT
GCGATTTTCTTACAAGATGCAGAATCTAAACCTGCGTTTGAAAGCGAACTCGCCAACTATGTTGGAATGGAAAGCTGCCT
GCTTTCTCAGTCTGGTTGGGCTGCCAATATTGGGTTGCTTCAAACTGTCTGTCCACCAAATACGCCTGTGTATATCGACT
TCTTTGCGCACATGTCGTTATGGGAAGGTATTCGCGCGGCGGGTGCGACAGCTCATCCATTTATGCATAACAATATGAGT
CACCTACGTAAGCAACTGGAGCGTCATGGTTCTGGTGTGATTGTTGTCGACTCGGTTTACAGCACCATCGGTACCATTGC
CCCGCTCCGCGACATCTACGAAATGGCGCAAGCGTTTGATTGCGCTGTTATCGTCGATGAATCGCACTCATTAGGGACAC
ACGGTGAAAAAGGTGCAGGCTTAGTGCAAGCGCTTGGGCTCACCGACCAAGTCGACTTTATCACCGTCAGCTTAGCTAAA
ACCTTCGCTTATCGCGCAGGCGCGATCCTTGGGCCTAAGCAGCTCTCTGATACTTTGCCGTTTGTCGCTTATCCCGCCAT
TTTTAGCTCAACCGTGTTGCCACAAGAAGTGATTCGCTTAGAGAAAACATTGGAGGTGATTAAAGGTGCAGATGACAAAC
GAGAAGCCCTGTTTAAGCGAGCACAGTCGCTTATTACGGGTCTAAAACGGATCGGCTTTAACATCCGTAGTGAATCTCAA
ATCGTCTCGCTAGAGTGCGGTAATGAAAGAAATACAGAGCGAGTACGCGATTTCCTCGAAGAGCGAGATGTGTTCGGCGC
AGTGTTCTGCCGTCCTGCTACGGGTAAGAATAAGAACATCATCCGATTTTCAGTGAATGCTGACATGACTCCACGAGACA
TTGACCATGTGCTCACGGTTTGTCATGAGGCATACCGTCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547