Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ITG10_RS06510 Genome accession   NZ_CP066149
Coordinates   1450692..1451696 (+) Length   334 a.a.
NCBI ID   WP_017630922.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445692..1456696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS06495 (ITG10_06420) - 1446064..1447353 (-) 1290 WP_017630924.1 malic enzyme-like NAD(P)-binding protein -
  ITG10_RS06500 (ITG10_06425) rpmE 1447687..1447905 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  ITG10_RS06505 (ITG10_06430) priA 1448250..1450451 (+) 2202 WP_017630923.1 primosomal protein N' -
  ITG10_RS06510 (ITG10_06435) cytR 1450692..1451696 (+) 1005 WP_017630922.1 DNA-binding transcriptional regulator CytR Regulator
  ITG10_RS06515 (ITG10_06440) ftsN 1451819..1452358 (+) 540 WP_017630921.1 cell division protein FtsN -
  ITG10_RS06520 (ITG10_06445) hslV 1452577..1453125 (+) 549 WP_017630920.1 ATP-dependent protease subunit HslV -
  ITG10_RS06525 (ITG10_06450) hslU 1453183..1454523 (+) 1341 WP_009848880.1 HslU--HslV peptidase ATPase subunit -
  ITG10_RS06530 (ITG10_06455) - 1454679..1455596 (+) 918 WP_017630919.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ITG10_RS06535 (ITG10_06460) rraA 1455670..1456188 (+) 519 WP_017630918.1 ribonuclease E activity regulator RraA -
  ITG10_RS06540 (ITG10_06465) zapB 1456294..1456536 (-) 243 WP_009848877.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36525.09 Da        Isoelectric Point: 6.4911

>NTDB_id=517878 ITG10_RS06510 WP_017630922.1 1450692..1451696(+) (cytR) [Vibrio sp. ED004]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVAMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=517878 ITG10_RS06510 WP_017630922.1 1450692..1451696(+) (cytR) [Vibrio sp. ED004]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACTGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGTAAGCGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCATATTTCGCTGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTTCTATTGGGTGACAGCGGTCAACAAAAGAAGCGTGAGTCTTCCTT
TGTTAACCTTGTCTTCACTAAGCAAGCGGACGGCATGTTATTGCTTGGCACCGACCACCCATTTGATGTCAGCAAACCAG
AACAAAAGAACTTACCACCGATGGTAATGGCCTGTGAGTTCGCTCCTGAGCTTGAACTCCCAACGGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCTCAGTTAGGCCATAAACGTATCGCTCAAATCTCTGGTCCAGTATC
AGCAACCCTGTGTAAGTTCCGCCAACAAGGTTACCAACAAGCACTGCGTCGTGCAGGTGTAGCAATGAACCCAGCCTACA
GCACAGTCGGTGACTTCACTTTTGAAGCCGGTGCTCAAGCCGTTCGTCAATTACTGGCACTGCCTGAACAGCCTACTGCT
ATCTTCTGTCACAACGATGCGATGGCCATAGGTGCGATTCAAGAAGCGAAGAAGTTAGGTTTACGTGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATTCAATTCGCTCAATACTGCGATCCACCGCTAACCACCATTTCTCAACCTCGTTATG
AGATTGGACGCCAAGCGATGCTGATGATGCTTGATCTACTGAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTAGAA
GCCAAATTAGTGGTTCGTGGCAGTACTGCTCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871