Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ITG10_RS05035 Genome accession   NZ_CP066149
Coordinates   1176541..1177059 (-) Length   172 a.a.
NCBI ID   WP_017629423.1    Uniprot ID   A0A7Y7N1I2
Organism   Vibrio sp. ED004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171541..1182059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS05010 (ITG10_04940) rimM 1171555..1172109 (-) 555 WP_017629425.1 ribosome maturation factor RimM -
  ITG10_RS05015 (ITG10_04945) rpsP 1172134..1172382 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  ITG10_RS05020 (ITG10_04950) ffh 1172594..1173988 (-) 1395 WP_010435884.1 signal recognition particle protein -
  ITG10_RS05025 (ITG10_04955) - 1174189..1174983 (+) 795 WP_132762097.1 inner membrane protein YpjD -
  ITG10_RS05030 (ITG10_04960) - 1175111..1176382 (+) 1272 WP_017629424.1 CNNM domain-containing protein -
  ITG10_RS05035 (ITG10_04965) luxS 1176541..1177059 (-) 519 WP_017629423.1 S-ribosylhomocysteine lyase Regulator
  ITG10_RS05040 (ITG10_04970) - 1177084..1177734 (-) 651 WP_017629422.1 hypothetical protein -
  ITG10_RS05045 (ITG10_04975) gshA 1177745..1179313 (-) 1569 WP_017629421.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.71 Da        Isoelectric Point: 4.5912

>NTDB_id=517865 ITG10_RS05035 WP_017629423.1 1176541..1177059(-) (luxS) [Vibrio sp. ED004]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=517865 ITG10_RS05035 WP_017629423.1 1176541..1177059(-) (luxS) [Vibrio sp. ED004]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACTCGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTGCGTTTCACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTTGAGCATTTATACGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCT
ATGGGTTGTCGTACTGGTTTCTATATGAGCCTAATTGGTACGCCTACAGAGCAACAAGTGGCTGACGGTTGGTTAGCTGC
GATGAAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCAATCATCGCTGCAGGTATCTCTGTAAACAAGAATGACGAACTGGCA
CTGCCAGAGTCGATGCTCCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7N1I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884