Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ITG10_RS02315 Genome accession   NZ_CP066149
Coordinates   551028..552416 (-) Length   462 a.a.
NCBI ID   WP_017632950.1    Uniprot ID   A0A4R2FNJ9
Organism   Vibrio sp. ED004     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 546028..557416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS02280 (ITG10_02230) moaD 546136..546381 (-) 246 WP_017632501.1 molybdopterin synthase sulfur carrier subunit -
  ITG10_RS02285 (ITG10_02235) moaC 546378..546857 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  ITG10_RS02290 (ITG10_02240) moaB 546870..547382 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  ITG10_RS02295 (ITG10_02245) moaA 547739..548728 (-) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  ITG10_RS02300 (ITG10_02250) - 549064..549951 (+) 888 WP_017632499.1 YvcK family protein -
  ITG10_RS02305 (ITG10_02255) tnpA 550036..550471 (-) 436 Protein_449 IS200/IS605 family transposase -
  ITG10_RS02310 (ITG10_02260) luxU 550660..551004 (-) 345 WP_017632949.1 quorum-sensing phosphorelay protein LuxU -
  ITG10_RS02315 (ITG10_02265) luxO 551028..552416 (-) 1389 WP_017632950.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ITG10_RS02320 (ITG10_02270) uvrB 552744..554774 (-) 2031 WP_017632951.1 excinuclease ABC subunit UvrB -
  ITG10_RS02330 (ITG10_02280) rsxA 555861..556439 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  ITG10_RS02335 (ITG10_02285) rsxB 556442..557035 (+) 594 WP_017632952.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51735.28 Da        Isoelectric Point: 6.4047

>NTDB_id=517859 ITG10_RS02315 WP_017632950.1 551028..552416(-) (luxO) [Vibrio sp. ED004]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=517859 ITG10_RS02315 WP_017632950.1 551028..552416(-) (luxO) [Vibrio sp. ED004]
ATGCAATCAAAAACGTTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCAGTCGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTTATTTTATTAGATTTACGTCTGCCTGATATGACGGGTATGGACGTACTCTTTGCTGTAAAACAAAAATAC
CCTGAAGTGCCCGTTATCTTCATGACAGCGCACGGCTCTATCGATACCGCTGTAGAAGCGATGCGTCATGGCTCTCAAGA
TTTCCTGATCAAACCGTGTGAAGCCGACCGACTTCGTATTACGGTAAACAATGCGATTCGTAAAGCCACCAAGCTTAAAA
ACAGCTCTGAACATCCGGGAAACCAGAACTATCAAGGTTTTATTGGTAGTAGCCAAACTATGCAGCAGGTTTACCGAACT
ATCGATTCCGCCGCATCGAGTAAAGCGAGCATTTTCATTACCGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
GATTCACGCGGCGAGTAAACGTGGCGATAAGCCTTTTATCGCAATCAACTGTGCGGCAATTCCTAAAGACTTGATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGGGCATTTACGGGCGCGGCAACCGATCGCCAAGGTGCTGCTGAATTGGCTGATGGA
GGCACACTGTTCCTCGATGAGCTGTGTGAGATGGATCTTGAACTGCAAACAAAGCTTCTACGTTTTATCCAAACGGGTAC
TTTTCAAAAGGTAGGCTCTTCGAAGATGAAGAGTGTGGACGTGCGCTTTGTTTGTGCGACCAACCGCGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTCTGTATGTGATTCCTCTGCATTTGCCGCCGTTGCGTGAA
CGTGGTGAAGATGTCATCGAGATTGCTTACTCATTATTGGGTTACATGTCGGTTGAAGAAGGCAAGGCGTTTGTACGTTT
TGCTCAAGAAGTGTTGGATCGCTTTAACCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTGCGGAATG
TAGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCACCATTAAACCAACCGATTGAAAACAGTCTG
CGCCTGAAAGAGAAGCAGAGTGAAGACATCACAGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGATGGCAACATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATATACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2FNJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838