Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECOPMV1_RS20680 Genome accession   NC_022370
Coordinates   497506..498111 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli PMV-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492506..503111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOPMV1_RS30455 - 493060..493158 (+) 99 Protein_451 hypothetical protein -
  ECOPMV1_RS20705 (ECOPMV1_00453) rsmS 493211..493372 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECOPMV1_RS20700 (ECOPMV1_00454) priC 493386..493913 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  ECOPMV1_RS20695 (ECOPMV1_00455) ybaN 493983..494360 (+) 378 WP_001188900.1 DUF454 family protein -
  ECOPMV1_RS20690 (ECOPMV1_00456) apt 494513..495064 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECOPMV1_RS24265 dnaX 495193..497124 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  ECOPMV1_RS20685 (ECOPMV1_00458) ybaB 497177..497506 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECOPMV1_RS20680 (ECOPMV1_00459) recR 497506..498111 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECOPMV1_RS20675 (ECOPMV1_00460) htpG 498221..500095 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  ECOPMV1_RS20670 (ECOPMV1_00461) adk 500276..500920 (+) 645 WP_001331495.1 adenylate kinase -
  ECOPMV1_RS20665 (ECOPMV1_00462) hemH 501052..502014 (+) 963 WP_001250114.1 ferrochelatase -
  ECOPMV1_RS20660 (ECOPMV1_00463) aes 502011..502970 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=51780 ECOPMV1_RS20680 WP_001195025.1 497506..498111(+) (recR) [Escherichia coli PMV-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=51780 ECOPMV1_RS20680 WP_001195025.1 497506..498111(+) (recR) [Escherichia coli PMV-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment