Detailed information NTG0517738

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZY06_RS01165
• Genome accession: NZ_CP080146
• Coordinates: 253733..254725 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PK8276
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 248733..259725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZY06_RS01135 (KZY06_01135)	ispD	248794..249504 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KZY06_RS01140 (KZY06_01140)	ispF	249504..249983 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZY06_RS01145 (KZY06_01145)	truD	249980..251029 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KZY06_RS01150 (KZY06_01150)	surE	251010..251771 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KZY06_RS01155 (KZY06_01155)	pcm	251765..252391 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KZY06_RS01160 (KZY06_01160)	nlpD	252576..253670 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KZY06_RS01165 (KZY06_01165)	rpoS	253733..254725 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KZY06_RS01170 (KZY06_01170)	ygbN	254819..256183 (-)	1365	WP_000104459.1	GntP family transporter	-
KZY06_RS01175 (KZY06_01175)	ygbM	256272..257048 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
KZY06_RS01180 (KZY06_01180)	ygbL	257053..257691 (-)	639	WP_001278994.1	aldolase	-
KZY06_RS01185 (KZY06_01185)	otnK	257688..258950 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=517738 KZY06_RS01165 WP_000081550.1 253733..254725(+) (rpoS) [Escherichia coli strain PK8276]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=517738 KZY06_RS01165 WP_000081550.1 253733..254725(+) (rpoS) [Escherichia coli strain PK8276]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715