Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZY05_RS10160 Genome accession   NZ_CP080139
Coordinates   1927751..1929178 (+) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain PK8241     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922751..1934178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY05_RS10120 (KZY05_10130) yeeW 1922955..1923149 (+) 195 WP_000988599.1 DUF5983 family protein -
  KZY05_RS10125 (KZY05_10135) - 1923183..1923275 (+) 93 Protein_2006 DUF957 domain-containing protein -
  KZY05_RS29950 (KZY05_10140) - 1923564..1923701 (-) 138 Protein_2007 transposase domain-containing protein -
  KZY05_RS29955 (KZY05_10145) - 1923764..1923946 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KZY05_RS10140 (KZY05_10150) tmaR 1924047..1924376 (-) 330 WP_000450409.1 DUF496 family protein -
  KZY05_RS10145 (KZY05_10155) yeeA 1924548..1925606 (-) 1059 WP_001200905.1 FUSC family protein -
  KZY05_RS10150 (KZY05_10160) sbmC 1925804..1926277 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KZY05_RS10155 (KZY05_10165) dacD 1926396..1927562 (-) 1167 WP_069723112.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZY05_RS10160 (KZY05_10170) sbcB 1927751..1929178 (+) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  KZY05_RS10165 (KZY05_10175) tsuB 1929221..1929448 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZY05_RS10170 (KZY05_10180) tsuA 1929462..1930520 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  KZY05_RS10175 (KZY05_10185) plaP 1930699..1932057 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZY05_RS10180 (KZY05_10190) yoeI 1932047..1932109 (-) 63 WP_010723108.1 membrane protein YoeI -
  KZY05_RS10185 (KZY05_10195) yeeY 1932324..1933253 (-) 930 WP_087205638.1 LysR substrate-binding domain-containing protein -
  KZY05_RS10190 (KZY05_10200) yeeZ 1933299..1934123 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=517668 KZY05_RS10160 WP_000980612.1 1927751..1929178(+) (sbcB) [Escherichia coli strain PK8241]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=517668 KZY05_RS10160 WP_000980612.1 1927751..1929178(+) (sbcB) [Escherichia coli strain PK8241]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583