Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JC616_RS08580 Genome accession   NZ_CP066126
Coordinates   1861480..1862841 (+) Length   453 a.a.
NCBI ID   WP_227107748.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain 32279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856480..1867841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS08555 hpnC 1857045..1857857 (+) 813 WP_107798715.1 squalene synthase HpnC -
  JC616_RS08560 hpnD 1857935..1858780 (+) 846 WP_107801710.1 presqualene diphosphate synthase HpnD -
  JC616_RS08565 hpnE 1858788..1860056 (+) 1269 WP_227107744.1 hydroxysqualene dehydroxylase HpnE -
  JC616_RS08570 - 1860118..1860873 (+) 756 WP_227107746.1 SDR family oxidoreductase -
  JC616_RS08575 - 1860889..1861452 (+) 564 WP_107798718.1 hypothetical protein -
  JC616_RS08580 radA 1861480..1862841 (+) 1362 WP_227107748.1 DNA repair protein RadA Machinery gene
  JC616_RS08585 - 1862924..1863484 (+) 561 WP_107798720.1 sigma-70 family RNA polymerase sigma factor -
  JC616_RS08590 - 1863481..1863660 (+) 180 WP_107798721.1 zf-HC2 domain-containing protein -
  JC616_RS08595 - 1863777..1864136 (-) 360 WP_019104007.1 DUF2325 domain-containing protein -
  JC616_RS08600 - 1864850..1867390 (+) 2541 WP_227107750.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48952.28 Da        Isoelectric Point: 6.8174

>NTDB_id=517640 JC616_RS08580 WP_227107748.1 1861480..1862841(+) (radA) [Chromobacterium rhizoryzae strain 32279]
MAKIKTVFSCAECGGQTPKWQGQCPHCNAWNTLTEAVQAAPAANARFQSWSDSATQVQKLSDVQTEEVPRDPSGIDELDR
VLGGGVVRGAVILIGGDPGIGKSTLLLQALSEIGARRKVLYVSGEESPQQIALRATRLAVATERVNLLAEIRLEAILETL
KREQPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQTGITILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFVMTDRGLKGVSNPSAIFLSSYRDDVSGSCVLVTQEGSRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKPLPEKLVVFGEVGLAGEV
RPVARGQERLKEAAKLGFTRAIVPQANSPRQPIEGLRVIAVERLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=517640 JC616_RS08580 WP_227107748.1 1861480..1862841(+) (radA) [Chromobacterium rhizoryzae strain 32279]
ATGGCAAAAATCAAAACCGTATTCAGTTGCGCCGAGTGCGGCGGTCAAACGCCCAAATGGCAGGGCCAATGCCCGCATTG
CAACGCCTGGAACACGCTGACCGAGGCGGTGCAGGCCGCGCCGGCGGCCAACGCCCGTTTCCAGTCCTGGAGCGACAGCG
CCACCCAGGTGCAAAAGCTGTCCGATGTGCAAACCGAGGAAGTGCCGCGCGATCCATCCGGCATCGACGAGCTGGACCGG
GTGCTGGGCGGCGGCGTGGTGCGCGGCGCGGTGATCCTGATCGGCGGCGATCCCGGCATCGGCAAATCCACGCTATTGCT
GCAAGCGCTGTCCGAAATCGGCGCGCGCCGCAAAGTGCTCTATGTGTCCGGCGAGGAATCGCCGCAGCAGATCGCGCTGC
GCGCCACCCGTTTGGCGGTGGCCACCGAGCGCGTCAACCTGCTGGCGGAAATCCGGCTGGAAGCCATCCTGGAAACGCTG
AAGCGCGAGCAGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCCTGTACACCGACCAAGTGACCTCGGCGCCCGGCTC
GGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATGGCCAAGCAGACCGGCATCACCATTCTGCTGGTGGGAC
ACGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGGGAT
TCCCACTCCAATTACCGGATGATACGCGCGATCAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGTGATGAC
GGACCGCGGCCTCAAGGGCGTGTCCAATCCCTCGGCCATCTTCCTGTCCTCTTACCGCGACGATGTGTCCGGCTCCTGCG
TGCTGGTCACCCAGGAGGGCAGCCGGCCCTTGCTGGTGGAAATCCAGGCCTTGGTGGACGACTGCCACGGCTTCCAGCCC
AAGCGCCTGACCGTGGGCCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
CTTCGATCAGGACGTGTTCCTCAACGCGGTGGGCGGGGTCAAGATCAACGAACCGGCGGCCGATCTGGCCATCATCCTGG
CCATGGTGTCCTCCTTGCGCAACAAGCCCTTGCCGGAAAAGCTGGTGGTGTTCGGCGAAGTGGGTCTGGCCGGCGAGGTG
CGCCCGGTGGCGCGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCGCAGGCCAA
CAGCCCGCGCCAGCCGATAGAAGGGCTGCGGGTGATCGCGGTGGAGCGGCTGGATCAGGCGGTGGAATTCTGCCGCGAAT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.78

100

0.499
  radA Streptococcus mitis NCTC 12261

47.333

99.338

0.47
  radA Streptococcus pneumoniae Rx1

49.176

93.819

0.461
  radA Streptococcus pneumoniae D39

49.176

93.819

0.461
  radA Streptococcus pneumoniae R6

49.176

93.819

0.461
  radA Streptococcus pneumoniae TIGR4

49.176

93.819

0.461
  radA Streptococcus mitis SK321

49.176

93.819

0.461