Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JC616_RS05160 Genome accession   NZ_CP066126
Coordinates   1135040..1136461 (-) Length   473 a.a.
NCBI ID   WP_227107055.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain 32279     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130040..1141461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS05130 - 1130097..1131587 (-) 1491 WP_227107054.1 NAD(P)H-hydrate dehydratase -
  JC616_RS05135 - 1131633..1132268 (-) 636 WP_107798240.1 flavin prenyltransferase UbiX -
  JC616_RS05140 rapZ 1132303..1133145 (-) 843 WP_107798241.1 RNase adapter RapZ -
  JC616_RS05145 hprK 1133126..1134082 (-) 957 WP_019104261.1 HPr(Ser) kinase/phosphatase -
  JC616_RS05150 ptsN 1134075..1134536 (-) 462 WP_107798242.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JC616_RS05155 hpf 1134658..1134972 (-) 315 WP_019104259.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JC616_RS05160 rpoN/rpoN1 1135040..1136461 (-) 1422 WP_227107055.1 RNA polymerase factor sigma-54 Machinery gene
  JC616_RS05165 lptB 1136465..1137193 (-) 729 WP_227107056.1 LPS export ABC transporter ATP-binding protein -
  JC616_RS05170 lptA 1137190..1137744 (-) 555 WP_227107057.1 lipopolysaccharide transport periplasmic protein LptA -
  JC616_RS05175 lptC 1137734..1138303 (-) 570 WP_107798246.1 LPS export ABC transporter periplasmic protein LptC -
  JC616_RS05180 - 1138300..1138824 (-) 525 WP_107798247.1 HAD family hydrolase -
  JC616_RS05185 - 1138850..1139830 (-) 981 WP_227107058.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52083.12 Da        Isoelectric Point: 4.7110

>NTDB_id=517636 JC616_RS05160 WP_227107055.1 1135040..1136461(-) (rpoN/rpoN1) [Chromobacterium rhizoryzae strain 32279]
MKQTLQLKVSQQLTLTPQLQQSIKLLQMSTLDLQTEVERFLLDNPLLERGDEAPQGEAPDAAAQEPEAPAESRDDASGDD
GERGAETGELSDWGSGGRRGDGDDELDPMLNVPCPISLREHLLAQLGEVALPTRDQAIVQLLIEELDDDGYLGQTLEDIA
SHLPLELEIEADELMIGLRLLQQFDPPGVGARSLPEALALQLQRLDPDEPQRGLALAIVRDHLALLGNRDYTRLKKQLGV
DDAALRAAQALIARLNPRPTAGFGASDTQYVIPDVSVRKRKGRWVASLNGGAVPRLRVNQMYARLLAENRGGNGEMSSRL
QEAKWLVKNIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIADELGLHESTVSRVTTQKYLLCPRGLFELKYFF
GSALETDSGGECSATAIKAHIRSLIDAESPSKPLSDSALVEALAKQGIQVARRTIAKYREAMQIPPVNQRKTL

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=517636 JC616_RS05160 WP_227107055.1 1135040..1136461(-) (rpoN/rpoN1) [Chromobacterium rhizoryzae strain 32279]
ATGAAACAGACACTTCAGCTCAAGGTATCGCAGCAGCTGACCCTGACGCCGCAGCTGCAGCAATCGATCAAGCTGCTGCA
GATGTCCACCCTCGACCTGCAGACCGAAGTCGAGCGCTTCTTGCTGGACAATCCCTTGCTGGAGCGCGGCGACGAAGCGC
CGCAGGGCGAAGCGCCGGACGCCGCCGCCCAGGAACCGGAGGCCCCGGCGGAAAGCCGCGACGACGCCTCCGGCGACGAC
GGCGAACGCGGCGCGGAGACCGGCGAACTGAGCGACTGGGGCAGCGGCGGACGCCGCGGCGACGGCGACGACGAGCTGGA
CCCGATGCTGAACGTGCCCTGTCCTATCAGCCTGCGCGAGCACCTGCTGGCGCAGTTGGGTGAAGTGGCGCTGCCTACGC
GCGATCAGGCCATCGTCCAGCTGCTGATTGAAGAGCTGGACGACGACGGCTATCTGGGCCAGACGCTGGAAGACATCGCC
AGCCACCTGCCGCTGGAACTGGAAATCGAGGCCGACGAGCTGATGATAGGCCTGCGCCTGCTGCAGCAGTTCGACCCGCC
CGGCGTCGGCGCGCGCTCCTTGCCGGAAGCGCTGGCGCTGCAATTGCAGCGGCTGGACCCGGACGAGCCGCAGCGCGGCC
TGGCGCTGGCCATCGTCCGCGACCACCTGGCCTTGCTGGGCAACCGCGACTACACCCGGCTGAAAAAACAGCTGGGCGTG
GACGACGCCGCACTGCGCGCCGCCCAGGCGCTGATCGCCCGCCTCAACCCCCGCCCCACCGCCGGTTTCGGCGCCAGCGA
CACCCAGTACGTGATCCCCGACGTCTCGGTCAGAAAACGCAAGGGACGCTGGGTGGCCTCCCTCAACGGCGGCGCCGTGC
CTCGCTTGCGCGTCAACCAGATGTACGCGCGACTGCTGGCGGAAAACCGCGGCGGCAACGGCGAAATGTCCTCGCGGCTG
CAGGAGGCCAAATGGCTGGTGAAGAACATCCAGCAGCGATTTGACACTATCCTGAAAGTGGCGGAAGCTATCGTTGAACG
GCAGCAATCGTTCTTTGAACACGGCGAAGTGGCCATGCGCCCGCTGATTCTGCGCGACATCGCGGACGAGCTGGGCCTGC
ATGAATCCACGGTGTCCCGGGTCACCACCCAGAAATACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTATTTCTTC
GGCAGCGCGCTGGAAACCGACAGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCACATCCGCAGCCTGATCGACGC
CGAATCGCCGAGCAAACCGCTGTCCGACAGCGCCCTGGTCGAAGCGCTGGCCAAACAGGGAATACAAGTTGCCAGACGCA
CGATAGCCAAGTATCGTGAAGCCATGCAGATACCGCCGGTCAACCAGCGCAAGACGCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-471)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.789

100

0.56