Detailed information NTG0517633

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JC616_RS02500
• Genome accession: NZ_CP066126
• Coordinates: 552275..553432 (-)
• Length: 385 a.a.
• NCBI ID: WP_227106572.1
• Uniprot ID: -
• Organism: Chromobacterium rhizoryzae strain 32279
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 547275..558432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC616_RS02480	-	547750..549534 (+)	1785	WP_227106570.1	PglL family O-oligosaccharyltransferase	-
JC616_RS02485	rpoH	549607..550470 (-)	864	WP_107797923.1	RNA polymerase sigma factor RpoH	-
JC616_RS02490	ftsX	550656..551564 (-)	909	WP_107797924.1	permease-like cell division protein FtsX	-
JC616_RS02495	ftsE	551561..552214 (-)	654	WP_043592279.1	cell division ATP-binding protein FtsE	-
JC616_RS02500	pilA	552275..553432 (-)	1158	WP_227106572.1	signal recognition particle-docking protein FtsY	Machinery gene
JC616_RS02505	rsmD	553670..554227 (+)	558	WP_107797926.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JC616_RS02510	-	554332..554583 (+)	252	WP_107797927.1	YfhL family 4Fe-4S dicluster ferredoxin	-
JC616_RS02530	tuf	555071..556261 (+)	1191	WP_227106574.1	elongation factor Tu	-
JC616_RS02540	secE	556416..556772 (+)	357	WP_107797905.1	preprotein translocase subunit SecE	-
JC616_RS02545	nusG	556772..557305 (+)	534	WP_048411720.1	transcription termination/antitermination protein NusG	-
JC616_RS02550	rplK	557405..557836 (+)	432	WP_048416070.1	50S ribosomal protein L11	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40805.93 Da
• Isoelectric Point: 5.3425

>NTDB_id=517633 JC616_RS02500 WP_227106572.1 552275..553432(-) (pilA) [Chromobacterium rhizoryzae strain 32279]
MFSFFKRKTQSEPTPPATAPAEPTADIQPTALPDAGAPATQSETRTPEPPQAQPEPTPPTPAPIAPASPPAAEPLEAEPL
SLKKMSWAERLKAGLSKTRDKLGKSLAGLFGGGKIDEELYEELETVLLTADMGVDATLHLLGDVRERVSLKGLKDASELK
DALKDSLGDLISPLEKPLDVSGKKPFVIMMAGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLMAWGERNN
VTVIAQQGGDSAAVCYDAIQAAVARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEIILVLDANIGQNAIT
QVKTFDDALGLTGLILSKLDGTAKGGVIAAIAKQRPVPLRFVGVGESIDDLRPFKAKDYIDALFD

Nucleotide

• Length: 1158 bp

>NTDB_id=517633 JC616_RS02500 WP_227106572.1 552275..553432(-) (pilA) [Chromobacterium rhizoryzae strain 32279]
ATGTTTAGCTTCTTCAAAAGAAAAACCCAATCCGAGCCCACGCCTCCGGCAACCGCCCCTGCGGAGCCGACGGCCGATAT
TCAGCCCACCGCGCTGCCCGATGCGGGCGCGCCAGCCACCCAGTCCGAAACGCGGACACCCGAGCCGCCGCAAGCGCAGC
CCGAGCCGACGCCCCCGACGCCCGCCCCCATCGCACCGGCTTCGCCGCCGGCGGCCGAGCCGCTTGAAGCCGAGCCGCTT
TCGCTGAAGAAAATGAGCTGGGCCGAACGCCTGAAGGCCGGGCTGTCCAAAACCCGCGACAAGCTGGGCAAATCCCTGGC
CGGCCTGTTTGGCGGCGGCAAGATAGACGAGGAGCTGTACGAAGAGCTGGAAACCGTGCTGCTCACCGCCGACATGGGGG
TGGACGCCACCTTGCACCTGCTTGGCGACGTGCGCGAGCGCGTTTCGCTGAAAGGACTGAAAGACGCCTCGGAACTGAAA
GACGCGTTGAAGGATTCGCTCGGCGACCTGATCTCGCCGCTGGAAAAGCCGCTGGACGTCAGCGGCAAGAAACCTTTCGT
CATCATGATGGCCGGCGTCAACGGCGCCGGCAAGACCACGTCGATAGGCAAGCTGGCCAAGTACTACCAGAGCCAGGGCA
AGAGCGTGCTGCTCGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAACAGCTGATGGCCTGGGGCGAACGCAACAAC
GTCACCGTGATCGCCCAGCAAGGCGGCGACTCCGCCGCCGTCTGCTATGACGCGATCCAGGCCGCGGTCGCCCGCGGCAT
CGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCCACCCAGTTGCACCTGATGGAGGAAATCAAGAAGGTGAAGCGGG
TGATCCAGAAAGCCTTGCCCGACGCGCCGCATGAAATCATCCTGGTGCTGGACGCCAATATCGGCCAGAACGCCATCACC
CAGGTCAAGACCTTCGACGACGCCCTCGGCCTGACCGGGCTGATTCTGAGCAAGCTGGACGGCACGGCCAAGGGCGGCGT
GATCGCGGCCATCGCCAAGCAACGTCCGGTTCCGCTGCGTTTTGTCGGCGTGGGCGAAAGCATAGACGACCTGCGGCCGT
TCAAGGCCAAGGACTACATCGACGCGCTGTTCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (185-384)

• SRP54-type protein, helical bundle domain (SRP54_N) (100-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.766	100	0.66