Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   JC624_RS17995 Genome accession   NZ_CP066124
Coordinates   3746000..3746326 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain 32292     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741000..3751326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS17975 - 3741108..3741734 (-) 627 WP_002121153.1 FHA domain-containing protein -
  JC624_RS17980 gspD 3741775..3744045 (-) 2271 WP_044100184.1 type II secretion system secretin GspD -
  JC624_RS17985 - 3744087..3744923 (-) 837 WP_151283492.1 type II secretion system protein N -
  JC624_RS17990 gspN 3744923..3745666 (-) 744 WP_002121195.1 type II secretion system protein N -
  JC624_RS17995 hns 3746000..3746326 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  JC624_RS18000 - 3746521..3746961 (-) 441 WP_017400180.1 acyl-CoA thioesterase -
  JC624_RS18005 - 3746969..3748162 (-) 1194 WP_205668773.1 heme biosynthesis protein HemY -
  JC624_RS18010 - 3748172..3749014 (-) 843 WP_206239561.1 hypothetical protein -
  JC624_RS18015 hemD 3749023..3749790 (-) 768 WP_227062276.1 uroporphyrinogen-III synthase -
  JC624_RS18020 hemC 3749794..3750711 (-) 918 WP_227062278.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=517593 JC624_RS17995 WP_000801427.1 3746000..3746326(-) (hns) [Acinetobacter pittii strain 32292]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=517593 JC624_RS17995 WP_000801427.1 3746000..3746326(-) (hns) [Acinetobacter pittii strain 32292]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAGCAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1