Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZY04_RS05715 Genome accession   NZ_CP080133
Coordinates   1158027..1158764 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain PK8277     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1153027..1163764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY04_RS05685 (KZY04_05680) yfiL 1153185..1153550 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KZY04_RS05690 (KZY04_05685) aroF 1153760..1154830 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZY04_RS05695 (KZY04_05690) tyrA 1154841..1155962 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZY04_RS05700 (KZY04_05695) pheA 1156005..1157165 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZY04_RS05705 (KZY04_05700) pheL 1157264..1157311 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  KZY04_RS05710 (KZY04_05705) raiA 1157415..1157756 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KZY04_RS05715 (KZY04_05710) comL 1158027..1158764 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  KZY04_RS05720 (KZY04_05715) rluD 1158899..1159879 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZY04_RS05725 (KZY04_05720) yfiH 1159876..1160607 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  KZY04_RS05730 (KZY04_05725) clpC 1160737..1163310 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=517593 KZY04_RS05715 WP_000197673.1 1158027..1158764(-) (comL) [Escherichia coli strain PK8277]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=517593 KZY04_RS05715 WP_000197673.1 1158027..1158764(-) (comL) [Escherichia coli strain PK8277]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371