Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   JC624_RS02405 Genome accession   NZ_CP066124
Coordinates   484688..485572 (+) Length   294 a.a.
NCBI ID   WP_227062686.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479688..490572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS02380 - 480001..481248 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  JC624_RS02385 wrbA 481610..482212 (+) 603 WP_213030433.1 NAD(P)H:quinone oxidoreductase -
  JC624_RS02390 xpt 482264..482839 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  JC624_RS02395 - 482912..483625 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  JC624_RS02400 - 483784..484455 (-) 672 WP_068563833.1 hypothetical protein -
  JC624_RS02405 tonB2 484688..485572 (+) 885 WP_227062686.1 energy transducer TonB Machinery gene
  JC624_RS02410 ybeY 485624..486100 (-) 477 WP_016143540.1 rRNA maturation RNase YbeY -
  JC624_RS02415 phoL 486110..487198 (-) 1089 WP_002119513.1 PhoH family protein -
  JC624_RS02420 miaB 487236..488687 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33761.31 Da        Isoelectric Point: 7.6043

>NTDB_id=517571 JC624_RS02405 WP_227062686.1 484688..485572(+) (tonB2) [Acinetobacter pittii strain 32292]
MLNKRSLSIEPFHYWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVYQADFLAQADQQGSGA
FREAHRTSSDTLNPRLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=517571 JC624_RS02405 WP_227062686.1 484688..485572(+) (tonB2) [Acinetobacter pittii strain 32292]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTTATCAGGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCTAAATCCGAGGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGGGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878