NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	I9018_RS28085	Genome accession	NZ_CP066123
Coordinates	6120740..6122107 (-)	Length	455 a.a.
NCBI ID	WP_068576397.1	Uniprot ID	-
Organism	Pseudomonas sp. MPFS
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6115740..6127107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9018_RS28060 (I9018_27965)	yjiA	6115993..6116964 (-)	972	WP_241108059.1	GTPase	-
I9018_RS28065 (I9018_27970)	-	6117042..6117239 (-)	198	WP_007937254.1	YbdD/YjiX family protein	-
I9018_RS28070 (I9018_27975)	-	6117255..6119321 (-)	2067	WP_068576401.1	carbon starvation CstA family protein	-
I9018_RS28075 (I9018_27980)	-	6119597..6119965 (+)	369	WP_068576400.1	PilZ domain-containing protein	-
I9018_RS28080 (I9018_27985)	-	6119980..6120702 (-)	723	WP_241110204.1	hypothetical protein	-
I9018_RS28085 (I9018_27990)	radA	6120740..6122107 (-)	1368	WP_068576397.1	DNA repair protein RadA	Machinery gene
I9018_RS28090 (I9018_27995)	-	6122153..6122701 (-)	549	WP_241108060.1	ankyrin repeat domain-containing protein	-
I9018_RS28095 (I9018_28000)	katB	6122776..6124317 (-)	1542	WP_241108061.1	catalase KatB	-
I9018_RS28100 (I9018_28005)	mscL	6124605..6125015 (+)	411	WP_241108062.1	large-conductance mechanosensitive channel protein MscL	-
I9018_RS28105 (I9018_28010)	-	6125070..6125846 (-)	777	WP_241108063.1	ferredoxin--NADP reductase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48786.36 Da Isoelectric Point: 7.1317

                                >NTDB_id=517553 I9018_RS28085 WP_068576397.1 6120740..6122107(-) (radA) [Pseudomonas sp. MPFS]

MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAMRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLSMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLKIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=517553 I9018_RS28085 WP_068576397.1 6120740..6122107(-) (radA) [Pseudomonas sp. MPFS]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGTTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAATG

CGGTGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGCGGTGCCGCGGCTCCCGCCGGGCGTACGGGCTGGGCCG

GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACGGCATCCGGCGAACTC

GACCGGGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGCAAGTCGACCAT

CCTCCTGCAGACCTTGTGCAACATCGCCATGCGCATGCCGGCGCTGTATGTCACTGGCGAGGAATCCCAGCAGCAGGTGG

CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAAACCTGCATCGAGACCATCATTGCC

ACGGCCCGGGTAGAGAAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATCGGCCCC

GGGCGGTGTATCCCAGGTACGCGAGAGTGCTGCCTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG

TCGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGTCCGCGGGTGCTGGAGCACATGGTGGATACGGTGCTGTATTTCGAA

GGCGAGTCCGATGGGCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTTGGCGTATTCGG

CATGACCGATCGTGGCTTGAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTCACCCGGGCCCAGGAGGAGGTGCCGGGCA

GCGTGGTCATGGCCACTTGGGAAGGCACCCGGCCTATGCTGGTGGAGGTCCAGGCGCTAGTGGATGACAGCCACCTGGCC

AACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCTTGTCCATGCTGCTGGCAGTATTGCACCGCCACGGCGGTAT

CCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTCCTGGAGACCGCGTCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCGTTGCCCCATGACCTGCTGGTGTTCGGCGAGGTGGGCCTGTCCGGC

GAGGTGCGTCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCCATCGTGCCCAA

GGGCAATGCGCCGAAGGAGCCGCCGGCAGGGCTGAAGATCATCGCCGTGACCCGCCTGGAGCAGGCATTGGATGCACTTT

TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.453	100	0.497
radA	Streptococcus pneumoniae Rx1	46.087	100	0.466
radA	Streptococcus pneumoniae R6	46.087	100	0.466
radA	Streptococcus pneumoniae TIGR4	46.087	100	0.466
radA	Streptococcus pneumoniae D39	46.087	100	0.466
radA	Streptococcus mitis SK321	46.272	100	0.464
radA	Streptococcus mitis NCTC 12261	46.053	100	0.462

Detailed information NTG0517553