Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I9190_RS18580 Genome accession   NZ_CP066121
Coordinates   4026367..4027248 (-) Length   293 a.a.
NCBI ID   WP_198114568.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4021367..4032248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS18550 (I9190_18550) - 4021727..4022101 (-) 375 WP_004825098.1 cytochrome b562 -
  I9190_RS18555 (I9190_18555) coaBC 4022266..4023531 (-) 1266 WP_005033953.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  I9190_RS18560 (I9190_18560) radC 4023634..4024368 (+) 735 WP_034707928.1 RadC family protein -
  I9190_RS18565 (I9190_18565) - 4024407..4025318 (+) 912 WP_004825105.1 bestrophin family protein -
  I9190_RS18570 (I9190_18570) - 4025417..4025701 (+) 285 WP_004825107.1 antibiotic biosynthesis monooxygenase family protein -
  I9190_RS18575 (I9190_18575) - 4025808..4026290 (+) 483 WP_005033955.1 ankyrin repeat domain-containing protein -
  I9190_RS18580 (I9190_18580) tonB2 4026367..4027248 (-) 882 WP_198114568.1 energy transducer TonB Machinery gene
  I9190_RS18585 (I9190_18585) - 4027478..4028164 (+) 687 WP_005033958.1 hypothetical protein -
  I9190_RS18590 (I9190_18590) - 4028316..4029023 (+) 708 WP_009586948.1 DUF3108 domain-containing protein -
  I9190_RS18595 (I9190_18595) - 4029127..4029702 (+) 576 WP_004825120.1 xanthine phosphoribosyltransferase -
  I9190_RS18600 (I9190_18600) - 4029854..4030717 (+) 864 WP_005033962.1 acyl-CoA thioesterase -
  I9190_RS18605 (I9190_18605) - 4030950..4031312 (+) 363 WP_042090293.1 hypothetical protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33338.85 Da        Isoelectric Point: 8.3470

>NTDB_id=517527 I9190_RS18580 WP_198114568.1 4026367..4027248(-) (tonB2) [Acinetobacter bereziniae strain GD0320]
MIKKLFANTQHTGYWWQDALFVGAVSIAVIVHGLFLSVQFGMPQENNTATKEIAVSIRPSEDKVKDADFLAQADQQGSGT
FRKEHRMSSDMPAQAEDKSAGDQQLEALEQIQQKRELKFEEKVLMTVLSWQKQAEQNDRKKAMEELQSQMQAKAAMVASL
EAQYLQKQQNFSKQQKIKTLDGIQAKQDASAGYLDKFREKVEMYGNRYYPDLAKQQRLSGEVRLMVILNNEGGIRAIRLI
ESSGHAILDEAAKNSVRKGASFGRFDAKMKDISELRIVRTWRFDPAESEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=517527 I9190_RS18580 WP_198114568.1 4026367..4027248(-) (tonB2) [Acinetobacter bereziniae strain GD0320]
ATGATAAAAAAATTATTTGCCAATACGCAACATACTGGGTACTGGTGGCAAGATGCATTATTTGTCGGGGCAGTTTCAAT
TGCTGTAATTGTCCACGGGTTATTTTTATCTGTGCAATTTGGTATGCCGCAAGAAAATAATACTGCGACAAAAGAAATTG
CTGTCAGTATTCGCCCAAGTGAAGATAAAGTCAAAGATGCTGATTTCCTTGCGCAAGCAGATCAACAAGGTTCAGGAACC
TTTCGTAAAGAACATCGGATGTCCTCTGATATGCCAGCACAAGCTGAAGATAAAAGTGCAGGGGATCAACAGCTTGAAGC
TTTAGAGCAAATACAGCAAAAACGTGAATTAAAATTTGAAGAAAAAGTGCTGATGACCGTTTTAAGTTGGCAAAAGCAAG
CTGAACAAAACGATCGAAAAAAGGCAATGGAAGAATTACAAAGCCAAATGCAAGCCAAAGCCGCGATGGTGGCGAGCTTA
GAAGCACAATATTTACAGAAGCAGCAAAATTTTAGTAAACAACAAAAAATTAAAACCTTAGATGGCATTCAAGCGAAACA
AGATGCATCGGCTGGTTATTTGGATAAATTCCGTGAAAAAGTCGAAATGTATGGCAACCGCTATTATCCTGATCTTGCTA
AGCAACAGCGCCTTTCAGGTGAAGTTCGTTTAATGGTGATTCTGAATAATGAAGGTGGAATACGGGCAATTCGTTTAATC
GAAAGTTCAGGTCATGCCATTTTAGATGAAGCCGCTAAAAATTCGGTACGTAAGGGTGCTTCATTTGGTCGTTTTGATGC
AAAAATGAAAGATATTTCTGAGCTACGAATTGTCAGAACGTGGCGTTTCGATCCCGCTGAGTCTGAATTTGAAGTCCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.769

100

0.72