Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZY03_RS08585 Genome accession   NZ_CP080126
Coordinates   1798254..1799681 (-) Length   475 a.a.
NCBI ID   WP_219805104.1    Uniprot ID   -
Organism   Escherichia coli strain PK8568     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1793254..1804681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY03_RS08555 (KZY03_08550) yeeZ 1793310..1794134 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  KZY03_RS08560 (KZY03_08555) yeeY 1794180..1795109 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KZY03_RS08565 (KZY03_08560) yoeI 1795324..1795386 (+) 63 WP_010723108.1 membrane protein YoeI -
  KZY03_RS08570 (KZY03_08565) plaP 1795376..1796734 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZY03_RS08575 (KZY03_08570) tsuA 1796913..1797970 (+) 1058 Protein_1675 thiosulfate utilization transporter TsuA/YeeE -
  KZY03_RS08580 (KZY03_08575) tsuB 1797984..1798211 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZY03_RS08585 (KZY03_08580) sbcB 1798254..1799681 (-) 1428 WP_219805104.1 exodeoxyribonuclease I Machinery gene
  KZY03_RS08590 (KZY03_08585) dacD 1799890..1801056 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZY03_RS08595 (KZY03_08590) sbmC 1801175..1801648 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KZY03_RS08600 (KZY03_08595) yeeA 1801846..1802904 (+) 1059 WP_001200891.1 FUSC family protein -
  KZY03_RS08605 (KZY03_08600) tmaR 1803076..1803405 (+) 330 WP_000450409.1 DUF496 family protein -
  KZY03_RS08610 (KZY03_08605) - 1803506..1803802 (-) 297 Protein_1682 EutP/PduV family microcompartment system protein -
  KZY03_RS08615 (KZY03_08610) - 1803781..1804140 (+) 360 WP_009008093.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54471.78 Da        Isoelectric Point: 5.6086

>NTDB_id=517522 KZY03_RS08585 WP_219805104.1 1798254..1799681(-) (sbcB) [Escherichia coli strain PK8568]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDNG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=517522 KZY03_RS08585 WP_219805104.1 1798254..1799681(-) (sbcB) [Escherichia coli strain PK8568]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATAACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579