Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I9190_RS01450 Genome accession   NZ_CP066121
Coordinates   323707..324033 (+) Length   108 a.a.
NCBI ID   WP_004826222.1    Uniprot ID   A0A0A8TPZ3
Organism   Acinetobacter bereziniae strain GD0320     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 318707..329033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS01425 (I9190_01425) hemC 319289..320215 (+) 927 WP_026040287.1 hydroxymethylbilane synthase -
  I9190_RS01430 (I9190_01430) - 320226..321008 (+) 783 WP_151781340.1 uroporphyrinogen-III synthase -
  I9190_RS01435 (I9190_01435) - 321005..321835 (+) 831 WP_151778953.1 hypothetical protein -
  I9190_RS01440 (I9190_01440) - 321840..323033 (+) 1194 WP_151781339.1 heme biosynthesis protein HemY -
  I9190_RS01445 (I9190_01445) - 323043..323480 (+) 438 WP_151781338.1 acyl-CoA thioesterase -
  I9190_RS01450 (I9190_01450) hns 323707..324033 (+) 327 WP_004826222.1 H-NS family nucleoid-associated regulatory protein Regulator
  I9190_RS01455 (I9190_01455) gspN 324197..324940 (+) 744 WP_198114763.1 type II secretion system protein N -
  I9190_RS01460 (I9190_01460) - 324940..325791 (+) 852 WP_151781336.1 type II secretion system protein N -
  I9190_RS01465 (I9190_01465) gspD 325833..328082 (+) 2250 WP_151781335.1 type II secretion system secretin GspD -
  I9190_RS01470 (I9190_01470) - 328256..329014 (+) 759 WP_171496517.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12354.13 Da        Isoelectric Point: 8.4039

>NTDB_id=517503 I9190_RS01450 WP_004826222.1 323707..324033(+) (hns) [Acinetobacter bereziniae strain GD0320]
MMPDISNLSVEELRKLTAEAEALIESKKDQAIEDAYNKIVEIAESAGLSLEQFIEYGAQKRKKTTRKAVEPRYRNKKNTA
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=517503 I9190_RS01450 WP_004826222.1 323707..324033(+) (hns) [Acinetobacter bereziniae strain GD0320]
ATGATGCCTGATATTAGTAATTTATCTGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGATCAAGCGATCGAAGATGCTTATAATAAGATTGTTGAAATTGCAGAATCTGCGGGTTTAAGCCTAGAGCAGTTTA
TTGAGTATGGTGCTCAAAAACGTAAAAAGACAACACGTAAAGCTGTTGAGCCACGCTACCGCAATAAGAAAAATACGGCT
GAAACTTGGACGGGTCGTGGTAAGCAACCTCGCTGGTTGGTTGCTGAAATTGAAAAAGGCGCTAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TPZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815