Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I9192_RS20345 Genome accession   NZ_CP066119
Coordinates   4341642..4343210 (+) Length   522 a.a.
NCBI ID   WP_004826317.1    Uniprot ID   A0A0A8TRJ6
Organism   Acinetobacter bereziniae strain GD03185     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4336642..4348210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9192_RS20325 (I9192_20320) - 4336866..4338170 (+) 1305 WP_005035343.1 homoserine dehydrogenase -
  I9192_RS20330 (I9192_20325) thrC 4338324..4339463 (+) 1140 WP_005035341.1 threonine synthase -
  I9192_RS20335 (I9192_20330) pbpG 4339685..4340737 (-) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I9192_RS20340 (I9192_20335) - 4340970..4341605 (+) 636 WP_004718392.1 response regulator -
  I9192_RS20345 (I9192_20340) pilS 4341642..4343210 (+) 1569 WP_004826317.1 PAS domain-containing sensor histidine kinase Regulator
  I9192_RS20350 (I9192_20345) pilR 4343228..4344643 (+) 1416 WP_005035339.1 sigma-54 dependent transcriptional regulator Regulator
  I9192_RS20355 (I9192_20350) - 4344742..4345914 (-) 1173 WP_042088582.1 S41 family peptidase -
  I9192_RS20360 (I9192_20355) gpmI 4345943..4347490 (-) 1548 WP_005035335.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59377.04 Da        Isoelectric Point: 5.7777

>NTDB_id=517498 I9192_RS20345 WP_004826317.1 4341642..4343210(+) (pilS) [Acinetobacter bereziniae strain GD03185]
MSSTVSVPIYQTIYRLGTLYSGYRLIIAFCLIIIFLITLENQPVHYEYPSLYFYSIATFTIIAALQMMLLKFYPHGVAQQ
FIGFFIVDIPFLSILVFALNGPNLAISILFVIAVFTANFLLSKNKALFITLVSVIAIIYQQFLGSYFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACSLLGISPLYAHE
QYHLSNFQPDLYEILKDAMFRDGERFQFESQQSSFTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFLMSDEQQQALLHQMITKQTVRINSIIKDTLDMAKNKKTHASQIDLPLFLEDLLLHDLSDAQ
AKIQTEIEADLVIYFDDSQLRQVLVNLLRNALRHNDQNAEYVLVKAFKNDTHICIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPRMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=517498 I9192_RS20345 WP_004826317.1 4341642..4343210(+) (pilS) [Acinetobacter bereziniae strain GD03185]
ATGTCGTCTACGGTATCTGTGCCTATTTATCAAACAATTTACCGTCTAGGCACACTTTACTCAGGTTATCGACTGATTAT
TGCCTTTTGTTTAATCATTATTTTTCTGATTACCTTAGAAAATCAGCCTGTTCACTACGAATACCCAAGTTTATATTTTT
ATTCGATTGCGACCTTTACCATCATTGCAGCATTGCAAATGATGTTGTTGAAATTTTACCCTCATGGCGTTGCACAGCAG
TTTATTGGCTTTTTTATTGTTGATATTCCATTCCTCAGTATCTTGGTATTTGCGCTGAATGGTCCAAATTTAGCCATCAG
TATTTTATTTGTGATTGCAGTCTTTACTGCAAATTTTTTACTGAGTAAAAACAAAGCATTATTTATTACCTTAGTGTCTG
TCATTGCCATTATCTATCAGCAATTTCTGGGCAGTTATTTTGATTTTTCTAATTTAAATAATATTAGTAATAGTGCCTTA
TTGGCTTTCTTGTTTTTTATGGTGTACGGAATCGGGCAAATTGCAATCAACCGTTTTCAGGTTCTTGAGTCCTTAAATAC
GTACCAATCTTTAGAGCTTTTTAAGCTACAAAATATCAACCGCTATATTTTAGAACAAATCGAAGTCGGTTATTTGGTAC
TCGATGAAAAATGTAAAATTATTGTCAGTAATCCTGCCGCATGTTCACTATTAGGAATATCACCCCTGTATGCACATGAA
CAATATCATTTATCCAATTTCCAGCCTGATCTCTATGAAATTCTAAAAGATGCGATGTTTCGAGATGGTGAGCGTTTTCA
ATTTGAATCACAGCAATCCTCATTTACCGTTGATATTCGGGTACAAAAACTGATTGTTCCACATCAGGCGCTGACACTTC
TTGTACTTGAAGATGCACAAAAAATAAATCAAAAGGTACAACAGCTTAAACTTGCAGCATTGGGACAATTATCAGCAAGT
ATTGCTCATGAAATTCGTAATCCACTCGCTGCCATTGCGCAGGCAAATGATCTTTTTCTGATGAGTGATGAACAGCAGCA
AGCATTACTCCATCAAATGATTACCAAGCAGACTGTCCGTATTAACAGTATTATCAAAGATACTTTAGATATGGCAAAAA
ACAAAAAAACCCATGCCAGTCAAATCGACTTACCACTATTTTTAGAAGATTTATTGTTACACGATTTAAGTGATGCTCAA
GCTAAAATCCAAACTGAAATTGAAGCAGATCTTGTGATTTATTTTGATGATTCTCAATTAAGGCAAGTACTTGTCAATCT
ATTGCGTAATGCATTACGCCATAATGATCAAAATGCGGAATACGTTTTGGTCAAGGCGTTTAAAAATGACACGCATATTT
GTATAGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGACCTTTCACAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAAACTATATGCGAAGCAAATCAAGCGAAATTAATTTACGTTGAGCA
AAAACAACAAGGGGCATGCTTTCGTATCGAATGCCCACGCATGGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TRJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.431

97.701

0.571