Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   I9192_RS20060 Genome accession   NZ_CP066119
Coordinates   4283778..4287557 (-) Length   1259 a.a.
NCBI ID   WP_200150012.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD03185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4278778..4292557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9192_RS20025 (I9192_20020) - 4278969..4279931 (+) 963 WP_005035435.1 alpha/beta fold hydrolase -
  I9192_RS20030 (I9192_20025) rplS 4280366..4280737 (-) 372 WP_004826442.1 50S ribosomal protein L19 -
  I9192_RS20035 (I9192_20030) trmD 4280942..4281691 (-) 750 WP_005035433.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I9192_RS20040 (I9192_20035) rimM 4281732..4282280 (-) 549 WP_005035430.1 ribosome maturation factor RimM -
  I9192_RS20045 (I9192_20040) rpsP 4282303..4282560 (-) 258 WP_004826436.1 30S ribosomal protein S16 -
  I9192_RS20050 (I9192_20045) - 4282706..4283191 (-) 486 WP_005035428.1 type IV pilin protein -
  I9192_RS20055 (I9192_20050) - 4283191..4283790 (-) 600 WP_005035426.1 type IV pilin protein -
  I9192_RS20060 (I9192_20055) pilY1 4283778..4287557 (-) 3780 WP_200150012.1 VWA domain-containing protein Machinery gene
  I9192_RS20065 (I9192_20060) - 4287573..4288403 (-) 831 WP_005035422.1 PilX N-terminal domain-containing pilus assembly protein -
  I9192_RS20070 (I9192_20065) pilW 4288400..4289416 (-) 1017 WP_171067105.1 PilW family protein Machinery gene
  I9192_RS20075 (I9192_20070) pilV 4289392..4289940 (-) 549 WP_026040258.1 type IV pilus modification protein PilV Machinery gene
  I9192_RS20080 (I9192_20075) - 4289941..4290441 (-) 501 WP_005035416.1 GspH/FimT family pseudopilin -
  I9192_RS20085 (I9192_20080) ispH 4290583..4291533 (-) 951 WP_005035414.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I9192_RS20090 (I9192_20085) gmk 4291668..4292288 (+) 621 WP_005035411.1 guanylate kinase -

Sequence

Protein


Download         Length: 1259 a.a.        Molecular weight: 132973.26 Da        Isoelectric Point: 7.9678

>NTDB_id=517491 I9192_RS20060 WP_200150012.1 4283778..4287557(-) (pilY1) [Acinetobacter bereziniae strain GD03185]
MKKQRNWFITELKLTQLSRGVSFVAGFVGTTLIASSVVQASDLQIYATPTAGKKTIVMMLDTSGSMSGGDSGQSGSRLTR
LKNGMNTFLDSNNPILTDVRVGLGHYSVNGDGKTARILVEANALGTVNSSQRQALKKAVAGLSASGNTPTAHAFAEAAAY
LMGTSPALKLNNAEVYFRYGGSNSSYWASCLSWNSAKTSCTSWGGTSTSTRNTTGLSSQSCTKYIDDQGRSYSGTCYSGS
EVILSLSGFNNSASSTKNGNQYLSPLPPVDERVSCDGQGVYILSDGEANGSSPSEATSIMSVVLDDNGTNFSCPSNGLNT
GSAASWHCMGEFAKRLFDKTSNPAQVSIQTAFVGFGSDFNSLSQTHVQQACKLSSRTQADRTGDDACSPGNGSVSVTSPG
YGNGGFFTTQSAQGVTDSVVAFINNLGKAPLEPLTTGAISVPVDNLNPSGLQPYGYLRGLEPNPQSSDLIWAGNLKKYQV
IQTGSNAGAFAAIGSKLVYDKQGGFNTGTRDLWNSSNVYSGKVYNDGGVIRLGGAYSKVPMPILGQTENLAIDPPQYAYT
ANPNALRNLFTDVQSTGGANLTNAGKNANLIKVPGGGIPTSGAANYVLDQFKNQTTLKDFPVLTKIKLLNYLGFSVPYDE
TATTLPTSLQTPNSPFLAMGGSIHSLPVQLTYSGTLDETGNLTSTRSQSVLYGTMDGGLHIVDGSTGAEQMAFIPAELLR
SDTGSKALIKGQTDTNAPVSGTDGAWISDSTYQTQRGSGSNSSAVKALSMNIYGGMRMGGSSYYALDVLNPSSPKLKFRL
GADVTGFGRIGQSWSKPVLANVRYNGVNKRVMIVGGGYDQCYENPQFELGKAVSNVDFPDTSCDKKIQAQGNAVYMVDAN
DGTLIWSATYGANSTDDKKYLKHSIVSRISAIDRDGDGLVDNLYFGDLGGQVFRADLDNYQTKSGSAYSNFGVRVSRIAN
LATNDSLNNKDWDYTGSKAPRFYEAPTLTIHDEGANTFLVVGLASGNRSTPLDVVPTVGREKLLPTTALSGRPVNNVYGL
IDRDFIEPNLMKSTYSVKTSSLSLDLLQKNPQLLTGKIANAFFGTGNLKQGWYRSLSSMSNGTERGGTAFRVAGGMKAYE
EPFAITGNLIIPVYDPQGTGISGQDPCKPRVVGETDRQVFCLPYGACLKTDGTVDGGAAGQESKTGFQTTTTGCPAGVSE
CNDNVIGTGIRGLAMAPITSSTPNSACSDKTLAGNEKGTGKWACQQIINPTRWYDKWLK

Nucleotide


Download         Length: 3780 bp        

>NTDB_id=517491 I9192_RS20060 WP_200150012.1 4283778..4287557(-) (pilY1) [Acinetobacter bereziniae strain GD03185]
ATGAAAAAACAGAGAAATTGGTTCATTACTGAATTAAAACTGACTCAATTAAGTCGAGGTGTTTCATTTGTCGCTGGTTT
TGTGGGGACAACATTAATCGCATCCTCTGTTGTACAGGCAAGTGATTTACAGATTTATGCAACACCAACAGCTGGGAAAA
AAACCATTGTCATGATGTTGGATACATCAGGAAGTATGAGCGGTGGAGACTCTGGTCAATCAGGGTCAAGATTAACGCGT
TTAAAAAATGGTATGAACACCTTTTTAGACAGTAATAATCCGATTTTAACCGATGTACGTGTTGGATTAGGACATTATTC
TGTAAATGGTGATGGTAAAACAGCAAGAATTTTGGTTGAGGCAAATGCTTTAGGAACTGTAAATTCGAGTCAACGTCAGG
CATTGAAGAAAGCTGTTGCTGGTTTATCTGCTTCAGGAAATACACCTACAGCTCATGCGTTTGCGGAAGCAGCTGCGTAC
TTAATGGGGACAAGTCCCGCTTTAAAGCTTAATAATGCCGAAGTATATTTTAGATATGGTGGAAGTAATTCATCATATTG
GGCGAGCTGTTTATCATGGAATAGTGCTAAGACATCATGTACAAGTTGGGGTGGAACGTCTACATCGACACGGAATACAA
CAGGTTTGAGCTCACAAAGCTGTACGAAATATATTGATGACCAAGGGCGAAGTTATTCAGGTACTTGTTATTCAGGGAGC
GAAGTAATTCTTTCATTGAGTGGTTTTAATAACTCAGCAAGTAGCACAAAAAATGGAAATCAATATCTCTCTCCTCTACC
TCCAGTTGATGAGCGAGTAAGTTGTGATGGGCAAGGTGTTTATATTTTGTCGGATGGTGAGGCAAATGGTTCAAGTCCAT
CTGAAGCAACATCTATTATGTCGGTAGTTTTAGATGATAATGGAACTAACTTCTCTTGCCCATCTAATGGATTAAATACT
GGATCAGCTGCTTCTTGGCATTGTATGGGGGAATTTGCCAAAAGACTGTTTGATAAAACAAGCAATCCTGCTCAAGTTTC
TATTCAAACAGCATTTGTCGGTTTTGGCAGTGACTTTAATAGTTTATCACAGACGCATGTTCAGCAAGCATGTAAACTGA
GCTCGCGCACCCAAGCAGATCGTACAGGTGATGATGCTTGCTCACCAGGAAATGGTTCTGTTTCAGTTACGTCTCCAGGT
TATGGTAATGGAGGTTTTTTTACGACTCAGTCCGCTCAAGGTGTAACAGATAGTGTTGTTGCATTTATTAATAACTTGGG
TAAAGCACCTCTAGAACCCTTAACGACTGGTGCGATTTCTGTTCCAGTGGATAATTTAAACCCTTCTGGACTCCAACCTT
ATGGATATTTACGAGGACTTGAACCTAATCCCCAATCTTCAGATCTTATTTGGGCGGGGAACTTAAAAAAATACCAAGTC
ATTCAAACAGGGAGTAATGCCGGTGCATTTGCGGCTATTGGATCAAAACTTGTGTATGACAAACAAGGTGGTTTTAATAC
AGGAACACGTGATTTGTGGAATAGTTCAAATGTGTATAGTGGCAAGGTTTATAATGATGGAGGGGTAATTCGCTTGGGTG
GAGCTTATTCTAAAGTTCCTATGCCAATACTTGGTCAAACAGAAAATCTTGCGATTGATCCTCCGCAATATGCTTATACA
GCTAATCCAAATGCTTTACGTAATTTATTTACAGATGTTCAGTCTACTGGTGGGGCAAATTTAACCAATGCCGGCAAAAA
TGCAAATCTGATTAAGGTGCCTGGTGGTGGTATACCAACGAGTGGAGCGGCAAACTATGTGTTGGATCAATTTAAAAACC
AAACAACTTTAAAAGACTTTCCTGTTTTAACCAAAATAAAATTATTAAACTATCTTGGTTTTAGTGTGCCATACGATGAA
ACAGCTACAACACTACCTACTTCATTGCAAACACCGAATTCGCCTTTCTTAGCTATGGGAGGCAGTATCCATTCACTTCC
TGTTCAATTGACCTATTCTGGAACATTAGATGAAACTGGTAATTTAACTTCTACACGTAGTCAATCCGTTTTATATGGCA
CTATGGATGGTGGATTACATATTGTGGATGGCTCAACTGGAGCTGAACAAATGGCTTTTATTCCAGCAGAGCTCCTAAGA
AGTGATACAGGTTCAAAAGCTTTAATTAAAGGGCAGACAGATACAAATGCCCCAGTTTCAGGGACAGATGGTGCTTGGAT
ATCCGATTCCACTTATCAGACTCAACGTGGTTCTGGATCAAACTCAAGTGCTGTTAAAGCGCTGTCAATGAATATCTATG
GTGGAATGCGGATGGGGGGATCAAGCTATTATGCTTTGGATGTCTTGAACCCCTCTTCTCCAAAACTGAAATTTAGACTG
GGCGCAGACGTTACTGGATTTGGGCGTATTGGTCAGTCTTGGTCCAAACCTGTACTTGCCAATGTCAGATATAATGGTGT
TAATAAACGAGTGATGATTGTGGGAGGGGGGTATGACCAGTGTTATGAAAACCCTCAATTTGAACTAGGCAAGGCCGTGT
CTAACGTAGACTTCCCTGATACTAGTTGTGATAAGAAAATACAAGCACAAGGTAATGCCGTCTATATGGTTGATGCAAAT
GATGGGACTTTGATCTGGTCAGCAACATATGGAGCGAATTCAACTGACGACAAAAAGTATCTAAAGCATAGCATTGTTAG
TCGTATCAGTGCGATAGATCGTGATGGAGATGGTTTGGTTGATAACTTGTATTTTGGGGATTTAGGCGGACAGGTTTTCC
GAGCAGATTTAGATAATTATCAAACTAAATCAGGATCAGCTTACAGTAACTTTGGTGTTAGAGTGAGTCGAATTGCGAAT
CTTGCAACTAATGATTCTTTGAATAATAAAGATTGGGACTATACTGGCAGTAAAGCACCTAGATTCTATGAAGCTCCAAC
TTTAACTATCCATGACGAAGGTGCAAATACTTTTCTTGTTGTTGGTTTAGCATCAGGAAATAGAAGTACACCGCTCGATG
TTGTTCCAACAGTAGGACGAGAAAAGTTATTACCTACGACAGCGTTATCTGGGCGACCTGTTAATAATGTATACGGTCTG
ATTGATCGAGACTTCATTGAACCCAATTTAATGAAATCAACATATTCAGTTAAGACGAGTAGTCTAAGCTTAGATCTACT
ACAGAAAAACCCTCAATTGCTTACAGGTAAAATTGCAAATGCCTTTTTTGGAACAGGTAATTTAAAACAAGGTTGGTATC
GTTCATTATCAAGTATGAGCAATGGTACGGAACGAGGTGGGACCGCTTTTCGCGTTGCTGGTGGAATGAAAGCCTATGAA
GAACCATTTGCAATTACAGGTAATTTAATTATTCCTGTTTATGATCCACAAGGTACAGGTATTTCTGGGCAAGATCCATG
TAAACCGCGTGTAGTCGGTGAAACCGATCGTCAAGTATTTTGTTTACCTTATGGTGCATGCTTAAAAACAGATGGTACTG
TGGATGGGGGGGCAGCTGGGCAAGAGTCAAAAACAGGCTTCCAAACCACGACAACGGGTTGCCCTGCTGGTGTTTCTGAG
TGTAATGATAATGTCATAGGTACTGGTATTCGAGGTCTAGCAATGGCACCGATTACAAGTTCTACGCCAAATAGTGCTTG
CTCAGATAAAACTTTGGCGGGAAATGAAAAAGGGACTGGTAAATGGGCTTGTCAGCAAATCATTAATCCAACTAGATGGT
ACGATAAATGGCTCAAATAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(653-938)

von Willebrand factor type A domain (VWA_2)

(56-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

57.692

100

0.584