Detailed information NTG0051748

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECOPMV1_RS08845
• Genome accession: NC_022370
• Coordinates: 3070979..3071971 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli PMV-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3065979..3076971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECOPMV1_RS08865 (ECOPMV1_02997)	ygbM	3066610..3067386 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
ECOPMV1_RS08860 (ECOPMV1_02998)	ygbN	3067475..3068839 (+)	1365	WP_000104443.1	GntP family transporter	-
ECOPMV1_RS08855 (ECOPMV1_02999)	-	3068982..3070025 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
ECOPMV1_RS08850 (ECOPMV1_03000)	-	3070250..3070801 (+)	552	WP_001179442.1	flavodoxin family protein	-
ECOPMV1_RS08845 (ECOPMV1_03001)	rpoS	3070979..3071971 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECOPMV1_RS08840 (ECOPMV1_03002)	nlpD	3072034..3073128 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECOPMV1_RS08835 (ECOPMV1_03003)	pcm	3073313..3073939 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ECOPMV1_RS08830 (ECOPMV1_03004)	surE	3073933..3074694 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECOPMV1_RS08825 (ECOPMV1_03005)	truD	3074675..3075724 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
ECOPMV1_RS08820 (ECOPMV1_03006)	ispF	3075721..3076200 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECOPMV1_RS08815 (ECOPMV1_03007)	ispD	3076200..3076910 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=51748 ECOPMV1_RS08845 WP_000081550.1 3070979..3071971(-) (rpoS) [Escherichia coli PMV-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=51748 ECOPMV1_RS08845 WP_000081550.1 3070979..3071971(-) (rpoS) [Escherichia coli PMV-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715