Detailed information NTG0517433

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZO72_RS04660
• Genome accession: NZ_CP080121
• Coordinates: 953397..954389 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PK8217
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 948397..959389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZO72_RS04630 (KZO72_04635)	ispD	948458..949168 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KZO72_RS04635 (KZO72_04640)	ispF	949168..949647 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZO72_RS04640 (KZO72_04645)	truD	949644..950693 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
KZO72_RS04645 (KZO72_04650)	surE	950674..951435 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KZO72_RS04650 (KZO72_04655)	pcm	951429..952055 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KZO72_RS04655 (KZO72_04660)	nlpD	952240..953334 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KZO72_RS04660 (KZO72_04665)	rpoS	953397..954389 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KZO72_RS04665 (KZO72_04670)	ygbN	954483..955847 (-)	1365	WP_000104441.1	GntP family transporter	-
KZO72_RS04670 (KZO72_04675)	ygbM	955936..956712 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KZO72_RS04675 (KZO72_04680)	ygbL	956717..957355 (-)	639	WP_001278994.1	aldolase	-
KZO72_RS04680 (KZO72_04685)	otnK	957352..958614 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=517433 KZO72_RS04660 WP_000081550.1 953397..954389(+) (rpoS) [Escherichia coli strain PK8217]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=517433 KZO72_RS04660 WP_000081550.1 953397..954389(+) (rpoS) [Escherichia coli strain PK8217]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715