Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6I02_RS08180 Genome accession   NZ_CP066093
Coordinates   1801106..1802911 (-) Length   601 a.a.
NCBI ID   WP_198463437.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796106..1807911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08160 (I6I02_08160) - 1796865..1797350 (-) 486 WP_002885497.1 LURP-one-related/scramblase family protein -
  I6I02_RS08165 (I6I02_08165) - 1797688..1798830 (-) 1143 WP_198463436.1 peptidyl-prolyl cis-trans isomerase -
  I6I02_RS08170 (I6I02_08170) - 1798892..1799599 (-) 708 WP_014633986.1 O-methyltransferase -
  I6I02_RS08175 (I6I02_08175) - 1799671..1800891 (-) 1221 WP_073689868.1 OFA family MFS transporter -
  I6I02_RS08180 (I6I02_08180) pepF 1801106..1802911 (-) 1806 WP_198463437.1 oligoendopeptidase F Regulator
  I6I02_RS08185 (I6I02_08185) - 1802922..1803881 (-) 960 WP_049545682.1 competence protein CoiA -
  I6I02_RS08190 (I6I02_08190) - 1805185..1807122 (-) 1938 WP_107372608.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69082.16 Da        Isoelectric Point: 4.6024

>NTDB_id=517373 I6I02_RS08180 WP_198463437.1 1801106..1802911(-) (pepF) [Streptococcus salivarius strain FDAARGOS_1045]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLRKASAYAGHLLYSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDAEKLTAFKAEEPGLGLYDHYFERLLANKDHVLSQKAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDYLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLDELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=517373 I6I02_RS08180 WP_198463437.1 1801106..1802911(-) (pepF) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTCAGACAATCGTACTCATTTAGAAGAAAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACCGAATATGAAAGCACTGTTCAGGATTTGAGGAAGGCTAGTGCTTATGCAGGTCATCTCTTGTATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGTCTGTATCAAGAGTACCAAGCAAAGGCCTCAAACCTTTATTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGCTGAAAAGTTAACAGCCTTCAAAGCAGAGGAACCAGGGCTTGGACTTT
ATGACCACTATTTCGAACGCCTCTTGGCCAACAAGGACCACGTTCTTTCTCAAAAAGCTGAAGAGCTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTTAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCGGCTAATTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGAC
TTGACGAGCTGAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAGTCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGACACTCTGGACTATCTCTTTACCTTGGTTCACGAGACTGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAAAGACGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATCCATGAAGCAGATGCCTCTGGTCAAATCTTGACAGCTGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTAGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGATTATCCTTTG
GAAGTTATCAAGAAAGCTGGCGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGATGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

98.003

100

0.98