Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I02_RS00325 Genome accession   NZ_CP066093
Coordinates   61022..62383 (+) Length   453 a.a.
NCBI ID   WP_073950651.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56022..67383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS00295 (I6I02_00295) - 56547..57107 (-) 561 WP_198463598.1 MptD family putative ECF transporter S component -
  I6I02_RS00300 (I6I02_00300) - 57116..57907 (-) 792 WP_002886988.1 formate/nitrite transporter family protein -
  I6I02_RS00305 (I6I02_00305) - 58024..59274 (-) 1251 WP_002891978.1 NAD(P)H-dependent oxidoreductase -
  I6I02_RS00310 (I6I02_00310) - 59293..59895 (-) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  I6I02_RS00315 (I6I02_00315) - 60102..60548 (+) 447 WP_002886985.1 dUTP diphosphatase -
  I6I02_RS00320 (I6I02_00320) - 60558..61010 (+) 453 WP_002891974.1 isochorismatase family protein -
  I6I02_RS00325 (I6I02_00325) radA 61022..62383 (+) 1362 WP_073950651.1 DNA repair protein RadA Machinery gene
  I6I02_RS00330 (I6I02_00330) - 62472..63167 (+) 696 WP_037598509.1 TIGR00266 family protein -
  I6I02_RS00335 (I6I02_00335) - 63319..63816 (+) 498 WP_198463599.1 beta-class carbonic anhydrase -
  I6I02_RS00340 (I6I02_00340) - 63911..64264 (-) 354 WP_037600084.1 DUF3397 domain-containing protein -
  I6I02_RS00345 (I6I02_00345) rplK 64436..64861 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  I6I02_RS00350 (I6I02_00350) rplA 64961..65650 (+) 690 WP_037598508.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.6528

>NTDB_id=517334 I6I02_RS00325 WP_073950651.1 61022..62383(+) (radA) [Streptococcus salivarius strain FDAARGOS_1045]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQIIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=517334 I6I02_RS00325 WP_073950651.1 61022..62383(+) (radA) [Streptococcus salivarius strain FDAARGOS_1045]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTGAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCTCGCATAAAGACTGACATGGATGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCCGTTCGCAGTCAAGTAGAG
GCCATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTAGATACGGTACTCTATTTTGAGGGGGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAACCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTTGCTGTAGCCGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTCATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAGGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGATCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614