Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6I06_RS09840 Genome accession   NZ_CP066075
Coordinates   2249048..2250220 (+) Length   390 a.a.
NCBI ID   WP_042328791.1    Uniprot ID   -
Organism   Paraburkholderia ginsengisoli strain FDAARGOS_1049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2244048..2255220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I06_RS09810 (I6I06_09810) - 2244629..2245249 (+) 621 WP_042328801.1 50S ribosomal protein L25/general stress protein Ctc -
  I6I06_RS09815 (I6I06_09815) pth 2245401..2246003 (+) 603 WP_042328798.1 aminoacyl-tRNA hydrolase -
  I6I06_RS09820 (I6I06_09820) hisC 2246071..2247150 (+) 1080 WP_042328797.1 histidinol-phosphate transaminase -
  I6I06_RS09825 (I6I06_09825) - 2247233..2247490 (-) 258 WP_012431644.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6I06_RS09830 (I6I06_09830) coaD 2247554..2248069 (-) 516 WP_042328795.1 pantetheine-phosphate adenylyltransferase -
  I6I06_RS09835 (I6I06_09835) rsmD 2248182..2248796 (-) 615 WP_042328793.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6I06_RS09840 (I6I06_09840) pilA 2249048..2250220 (+) 1173 WP_042328791.1 signal recognition particle-docking protein FtsY Machinery gene
  I6I06_RS09845 (I6I06_09845) maiA 2250369..2251013 (-) 645 WP_198488099.1 maleylacetoacetate isomerase -
  I6I06_RS09850 (I6I06_09850) - 2251043..2251741 (-) 699 WP_042328775.1 fumarylacetoacetate hydrolase family protein -
  I6I06_RS09855 (I6I06_09855) ybiB 2251981..2252958 (+) 978 WP_042328788.1 DNA-binding protein YbiB -
  I6I06_RS09860 (I6I06_09860) - 2253502..2254563 (+) 1062 Protein_1941 2-isopropylmalate synthase -
  I6I06_RS09865 (I6I06_09865) - 2254711..2255094 (-) 384 WP_042328770.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 41441.46 Da        Isoelectric Point: 4.7846

>NTDB_id=517218 I6I06_RS09840 WP_042328791.1 2249048..2250220(+) (pilA) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
MFSFFKRFKGSKESDTAADESQTAPEGSMPEIAAEAPVAQPAPRPAAPLGVGTPTAVPAAIEPEPEPEPEPEEAAFEAVE
IVPPPAQDAGAKRSWLTRLKTGLSKTSSNLTGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLREKVRSERLTDP
QQVKAALRTLLVELLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWG
QRNNVTVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQ
NALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=517218 I6I06_RS09840 WP_042328791.1 2249048..2250220(+) (pilA) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATACCGCGGCAGACGAGTCGCAGACGGCGCCCGAAGG
CTCGATGCCCGAAATCGCTGCCGAGGCGCCCGTCGCGCAGCCGGCTCCGCGTCCCGCTGCGCCGCTCGGCGTCGGCACAC
CGACAGCCGTCCCGGCCGCAATTGAGCCGGAGCCCGAGCCGGAGCCGGAGCCGGAAGAAGCCGCGTTCGAAGCCGTCGAA
ATCGTCCCGCCGCCCGCGCAGGACGCGGGCGCGAAGCGCTCGTGGCTCACGCGCCTGAAGACCGGCCTGTCGAAAACCAG
TTCCAACCTGACCGGGATTTTCGTCGGCACGAAGATCGATGAAGATCTGTACGAAGAGCTCGAAACCGCACTGCTGATGT
CCGACGCGGGTGTCGAGGCCACCGAATTCCTGCTCGAATCGCTGCGCGAGAAAGTGCGCAGCGAGCGCCTCACCGATCCG
CAACAGGTCAAAGCCGCGCTGCGCACGCTGCTGGTCGAGCTGCTCAAGCCGCTCGAAAAATCGCTGATGCTCGGCCGCGC
GCAGCCGCTCGTGATGATGATCGCCGGCGTCAACGGCGCGGGCAAAACCACCAGCATCGGCAAGCTTGCCAAGCATCTGC
AGAGTTTCAATCAATCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCCCGCGAGCAGTTGGCCATCTGGGGT
CAGCGCAACAACGTGACCGTGGTGTCTCAGGAAAGCGGCGACCCAGCGGCGGTAATCTTCGACGCGGTCGGTGCCGCGCG
CGCGCGCAAGATCGACGTGATGATGGCGGACACGGCCGGCCGTCTGCCAACCCAGCTGCATCTGATGGAAGAGCTGCGCA
AAGTGAAGCGCGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAATACCGGCCAG
AACGCGCTCGCGCAAGTGAAGGCCTTCGACGACGCGCTCGGTCTCACCGGCCTGATCGTCACCAAGCTGGACGGCACCGC
GAAGGGCGGCATTCTCGCGGCGATCGCGCGGCAGCGTCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCGAAG
ACTTGCAGCCGTTCAGCGCGGAAGAGTTCTCGGACGCGTTGCTGGGCGGTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(190-388)

SRP54-type protein, helical bundle domain (SRP54_N)

(109-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

64.238

77.436

0.497