Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I06_RS02750 Genome accession   NZ_CP066075
Coordinates   614185..615561 (+) Length   458 a.a.
NCBI ID   WP_042323081.1    Uniprot ID   A0A7T4N384
Organism   Paraburkholderia ginsengisoli strain FDAARGOS_1049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609185..620561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I06_RS02730 (I6I06_02730) - 609254..610309 (+) 1056 WP_042324425.1 DUF1853 family protein -
  I6I06_RS02735 (I6I06_02735) thiD 610480..611286 (-) 807 WP_042323074.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6I06_RS02740 (I6I06_02740) lplT 611345..612652 (-) 1308 WP_042323076.1 lysophospholipid transporter LplT -
  I6I06_RS02745 (I6I06_02745) alr 612871..613941 (+) 1071 WP_042323078.1 alanine racemase -
  I6I06_RS02750 (I6I06_02750) radA 614185..615561 (+) 1377 WP_042323081.1 DNA repair protein RadA Machinery gene
  I6I06_RS02755 (I6I06_02755) - 615704..615982 (+) 279 WP_042323083.1 DUF2866 domain-containing protein -
  I6I06_RS02760 (I6I06_02760) - 616119..617189 (-) 1071 WP_042324427.1 CaiB/BaiF CoA-transferase family protein -
  I6I06_RS02765 (I6I06_02765) - 617307..619259 (-) 1953 WP_042323085.1 ATP-binding cassette domain-containing protein -
  I6I06_RS02770 (I6I06_02770) - 619396..619875 (+) 480 WP_042323087.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48628.01 Da        Isoelectric Point: 7.3833

>NTDB_id=517211 I6I06_RS02750 WP_042323081.1 614185..615561(+) (radA) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
MAKPKTLYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPSTHRFQSLAKSAPVRRLADIEASDVPRFSTGVSEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKRALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQ
ATIADQRPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDAANA
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=517211 I6I06_RS02750 WP_042323081.1 614185..615561(+) (radA) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
GTGGCTAAACCCAAAACGTTGTACATCTGCAGTGAATGCGGCGGGCAATCGCCGAAATGGGCCGGCCAGTGCCCGTCGTG
CAATGCGTGGAACACGCTGGTCGAATCGGTCGCGGAAGCGCCGTCCACGCATCGCTTCCAGTCGCTCGCGAAGAGCGCGC
CGGTGCGACGTCTCGCCGACATCGAAGCATCCGACGTGCCGCGTTTCTCCACCGGCGTGAGCGAATTCGACCGCGTGCTC
GGCGGCGGTCTGGTGCCAGGTGGCGTGGTGCTGATCGGCGGCGATCCAGGCATCGGCAAATCGACGCTGCTGTTGCAATC
GCTCGCCGAAATCGCCGCCGACAAACGCGCGCTCTACATCAGCGGCGAAGAGTCGGCCGCCCAGATCGCGTTGCGCGCGC
AACGGCTCTCGCTGCTCGAACCCGGCTCGAAGGCGAGCGAGTTGCAATTGCTCGCGGAAATCCAGCTCGAAAAAATCCAG
GCGACGATCGCCGACCAGCGCCCCGACGTCGCGGTGATCGACTCGATCCAGACGGTCTATTCCGACGCGCTGACCTCCGC
GCCGGGCTCGGTCGCACAGGTGCGCGAGTGCGCGGCGCAATTGACGCGCATCGCCAAGCAGTCGGGCACCACCATCATCA
TGGTCGGCCACGTGACCAAGGAAGGCGCGCTGGCGGGGCCGCGCGTGCTCGAACACATCGTCGATACGGTGCTGTACTTC
GAGGGGGATACGCATTCGTCGTACCGGCTCGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGCCTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTTTTGTCGCAGCACGAGCAGTCGGTGCCGG
GCTCGTGCGTGCTGGTCACGCAGGAGGGCACGCGGCCGTTGCTGGTCGAAGTGCAGGCATTGGTGGACGCGGCCAACGCG
CCGAATCCGCGGCGGCTTGCAGTCGGCCTCGAACAGAACCGGCTGGCGATGCTGCTGGCCGTCCTGCATCGGCACGCGGG
CATCGCGTGTTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTAAAGATTACCGAGCCCGCCGCCGACCTGGCCG
TGCTGCTCGCGATCCACTCGTCGATGCGCAACAAGCCGCTGCCCAAGGGGCTGGTCGTGTTCGGCGAAGTAGGGCTCGCC
GGCGAGATCCGGCCGTCGCCGCGCGGACAGGAGCGGTTGAAGGAAGCGGCCAAGCTGGGTTTCTCGGTCGCGGTCATTCC
GAAGGCCAACGCGCCGAAACAGCCGATCGAAGGCTTACAGGTCGTTGCGGTCGAACGGATCGAACAGGCGATCGACCGGG
TCCGCACGCTCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4N384

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis SK321

47.817

100

0.478
  radA Streptococcus pneumoniae Rx1

47.505

100

0.478
  radA Streptococcus pneumoniae D39

47.505

100

0.478
  radA Streptococcus pneumoniae R6

47.505

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.505

100

0.478
  radA Streptococcus mitis NCTC 12261

47.484

99.782

0.474