Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   I6H74_RS05145 Genome accession   NZ_CP066069
Coordinates   1036434..1036730 (+) Length   98 a.a.
NCBI ID   WP_027971722.1    Uniprot ID   A0A9X8XHY7
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1026890..1036444 1036434..1036730 flank -10


Gene organization within MGE regions


Location: 1026890..1036730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS05050 (I6H74_05045) - 1026890..1028053 (-) 1164 WP_115256955.1 site-specific integrase -
  I6H74_RS05055 (I6H74_05050) - 1028130..1028654 (-) 525 WP_053042317.1 helix-turn-helix transcriptional regulator -
  I6H74_RS05060 (I6H74_05055) - 1028828..1029016 (+) 189 WP_046177300.1 hypothetical protein -
  I6H74_RS05065 (I6H74_05060) - 1029188..1029439 (+) 252 WP_046177301.1 hypothetical protein -
  I6H74_RS05070 (I6H74_05065) - 1029442..1029645 (+) 204 WP_046177302.1 hypothetical protein -
  I6H74_RS05075 (I6H74_05070) - 1029655..1029921 (+) 267 WP_000190301.1 hypothetical protein -
  I6H74_RS05080 (I6H74_05075) - 1029932..1030090 (+) 159 WP_165742490.1 hypothetical protein -
  I6H74_RS05085 (I6H74_05080) - 1030095..1030304 (+) 210 WP_115256954.1 hypothetical protein -
  I6H74_RS05090 (I6H74_05085) - 1030291..1031112 (+) 822 WP_115256953.1 phage replisome organizer N-terminal domain-containing protein -
  I6H74_RS05095 (I6H74_05090) - 1031124..1032008 (+) 885 WP_053042318.1 ATP-binding protein -
  I6H74_RS05100 (I6H74_05095) - 1032258..1032440 (+) 183 WP_000273649.1 hypothetical protein -
  I6H74_RS05105 (I6H74_05100) - 1032538..1032747 (+) 210 WP_046177305.1 hypothetical protein -
  I6H74_RS05115 (I6H74_05110) - 1033992..1034378 (+) 387 WP_232619998.1 hypothetical protein -
  I6H74_RS05120 (I6H74_05115) - 1034375..1034662 (+) 288 WP_046177192.1 hypothetical protein -
  I6H74_RS05125 (I6H74_05120) - 1034701..1035129 (+) 429 WP_053042316.1 hypothetical protein -
  I6H74_RS05130 (I6H74_05125) - 1035122..1035448 (+) 327 WP_046177191.1 hypothetical protein -
  I6H74_RS05135 (I6H74_05130) - 1035466..1035861 (+) 396 WP_046177190.1 hypothetical protein -
  I6H74_RS05140 (I6H74_05135) - 1036079..1036444 (+) 366 WP_046177189.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I6H74_RS05145 (I6H74_05140) HI0659 1036434..1036730 (+) 297 WP_027971722.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 10758.43 Da        Isoelectric Point: 4.8898

>NTDB_id=517103 I6H74_RS05145 WP_027971722.1 1036434..1036730(+) (HI0659) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPIEGEQVS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=517103 I6H74_RS05145 WP_027971722.1 1036434..1036730(+) (HI0659) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAAGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGCGAGCTTATCGAGGCTAGAAATGAAAAGGGCATTAGCCAGAAGAAACTAGAGGAGATGA
GTGGTGTTAGTCAACCTGTTATCGCTAGGATGGAAACAGGAAAGACAAGCCCACAGCTTGATACAGTGCTAAAAGTATTG
GCTAGTTTGGGTAAGACTTTAGCTGTTGTACCCATAGAGGGCGAACAGGTAAGCTAG

Domains


Predicted by InterproScan.

(37-88)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

56.044

92.857

0.52