Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I28_RS07405 Genome accession   NZ_CP066062
Coordinates   1541331..1542701 (+) Length   456 a.a.
NCBI ID   WP_103370208.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536331..1547701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS07385 (I6I28_07385) - 1536470..1536928 (+) 459 WP_103370211.1 CtsR family transcriptional regulator -
  I6I28_RS07390 (I6I28_07390) - 1536945..1537493 (+) 549 WP_103370210.1 UvrB/UvrC motif-containing protein -
  I6I28_RS07395 (I6I28_07395) - 1537525..1538496 (+) 972 WP_414486297.1 protein arginine kinase -
  I6I28_RS07400 (I6I28_07400) - 1538508..1540991 (+) 2484 WP_103370209.1 ATP-dependent Clp protease ATP-binding subunit -
  I6I28_RS07405 (I6I28_07405) radA 1541331..1542701 (+) 1371 WP_103370208.1 DNA repair protein RadA Machinery gene
  I6I28_RS07410 (I6I28_07410) - 1542831..1543889 (+) 1059 WP_049408656.1 PIN/TRAM domain-containing protein -
  I6I28_RS07415 (I6I28_07415) gltX 1544555..1546009 (+) 1455 WP_103370207.1 glutamate--tRNA ligase -
  I6I28_RS07420 (I6I28_07420) cysE 1546551..1547180 (+) 630 WP_049408674.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50215.50 Da        Isoelectric Point: 7.0876

>NTDB_id=517026 I6I28_RS07405 WP_103370208.1 1541331..1542701(+) (radA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MAKKKVVFECMACGYQSAKWMGKCPSCGAWNQMEEVVERKESSPKHGVRRRESHSKVQKLNEVHHETTPRIKSKSEEFNR
VLGGGIVTGSLVLIGGDPGIGKSTLLLQICAALSQSYSVLYITGEESLNQTKIRADRLDEDSSNLNVFAETDLEIIHDTV
VKLKPDLLVVDSIQTVFHPDISSAPGSVSQVRESTQSLMNIAKQNNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGVIISTASSFKDQAVDGLDCFVGEVGLTGEV
RRVSRIEQRVEEAAKLGFKRIIIPESNIGGWTFPESIQVIGVKNVHEALSFALGRG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=517026 I6I28_RS07405 WP_103370208.1 1541331..1542701(+) (radA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
GTGGCGAAGAAGAAAGTAGTCTTTGAATGTATGGCATGTGGTTACCAATCAGCTAAATGGATGGGTAAATGCCCAAGTTG
TGGTGCTTGGAACCAAATGGAAGAAGTCGTTGAACGCAAAGAGTCAAGTCCGAAACATGGCGTGCGACGTCGTGAATCTC
ATTCTAAAGTGCAGAAATTAAACGAGGTGCATCATGAAACGACGCCTAGAATTAAAAGTAAATCAGAAGAGTTCAATCGC
GTACTTGGTGGTGGAATCGTAACGGGGTCACTCGTGCTTATTGGCGGGGATCCAGGTATAGGTAAATCGACGCTCTTACT
TCAAATTTGTGCTGCGTTATCGCAGTCTTACAGCGTACTTTATATCACAGGTGAGGAATCACTCAACCAAACGAAGATTC
GTGCAGATCGTCTCGATGAAGATTCCAGCAACTTGAACGTCTTTGCTGAAACAGATTTAGAAATTATTCACGATACTGTG
GTTAAATTGAAGCCTGATTTACTCGTCGTTGACTCTATTCAAACTGTCTTTCATCCAGATATCAGTTCAGCGCCAGGTTC
CGTTTCTCAAGTTCGCGAAAGTACCCAGAGCTTAATGAATATCGCGAAACAGAACAACATTGCTACATTCATCGTCGGTC
ACGTGACGAAAGAAGGTCAAATCGCAGGACCACGTTTACTTGAGCATATGGTGGATACAGTACTTTACTTTGAAGGTGAC
GAACACCATGCTTACCGTATCTTACGTGCAGTGAAGAACCGTTTCGGCTCAACGAACGAAATGGGTATCTTCGAGATGAA
ACAAAGTGGTCTGAAAGGGGTCAAGAACCCTTCAGAAATGTTTCTCGAAGAACGCTCAACCAACGTGCCAGGTTCAACTA
TTGTCTCCACTATGGAAGGTACGAGACCGTTGTTGATCGAAGTACAAGCACTCGTGACGCCAACGACTTTTAACAACCCA
AGACGTATGGCTACGGGCATCGATCACAATCGCTTGAGCTTGCTCATGGCTGTGCTTGAGAAGAAAGAGAACTATCTTCT
GCAACAACAAGATGCTTATATTAAAGTCGCAGGCGGGGTTAGATTGACAGAACCAGCCGTCGATTTAGGTGTGATTATTT
CCACAGCTTCAAGCTTTAAAGACCAAGCTGTAGACGGGTTAGACTGTTTCGTTGGAGAGGTCGGTTTAACCGGAGAAGTT
AGACGTGTATCACGTATCGAGCAACGTGTGGAGGAAGCGGCTAAACTTGGTTTCAAACGTATCATTATACCCGAGTCTAA
TATCGGAGGATGGACCTTCCCTGAATCGATTCAAGTTATCGGTGTGAAGAACGTGCATGAAGCCTTGAGCTTTGCTTTAG
GCAGAGGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.87

100

0.664
  radA Streptococcus pneumoniae Rx1

59.911

98.465

0.59
  radA Streptococcus pneumoniae D39

59.911

98.465

0.59
  radA Streptococcus pneumoniae R6

59.911

98.465

0.59
  radA Streptococcus pneumoniae TIGR4

59.911

98.465

0.59
  radA Streptococcus mitis NCTC 12261

59.911

98.465

0.59
  radA Streptococcus mitis SK321

59.911

98.465

0.59