Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6I28_RS02315 Genome accession   NZ_CP066062
Coordinates   454892..455608 (+) Length   238 a.a.
NCBI ID   WP_002471758.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 449892..460608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS02295 (I6I28_02295) - 451303..452088 (+) 786 WP_049405856.1 carbon-nitrogen family hydrolase -
  I6I28_RS02300 (I6I28_02300) - 452849..453424 (+) 576 WP_145427902.1 accessory gene regulator AgrB -
  I6I28_RS02305 (I6I28_02305) agrD 453421..453558 (+) 138 WP_002471753.1 cyclic lactone autoinducer peptide AgrD -
  I6I28_RS12185 (I6I28_02310) agrC 453585..454877 (+) 1293 WP_103370420.1 quorum-sensing sensor histidine kinase AgrC -
  I6I28_RS02315 (I6I28_02315) agrA 454892..455608 (+) 717 WP_002471758.1 quorum-sensing response regulator AgrA Regulator
  I6I28_RS02320 (I6I28_02320) - 455722..456693 (-) 972 WP_103370419.1 carbohydrate kinase family protein -
  I6I28_RS02325 (I6I28_02325) - 456693..458174 (-) 1482 WP_049405864.1 sucrose-6-phosphate hydrolase -
  I6I28_RS02330 (I6I28_02330) - 458258..459274 (-) 1017 WP_103370418.1 LacI family DNA-binding transcriptional regulator -
  I6I28_RS02335 (I6I28_02335) - 459472..459696 (-) 225 WP_002471757.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.66 Da        Isoelectric Point: 5.0980

>NTDB_id=517014 I6I28_RS02315 WP_002471758.1 454892..455608(+) (agrA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MKIFICEDDIKQRESIESIINNYIMIEEKPMKVEMSTDDPYAVLERSKEINDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVSAMDFIFKDEPNELQKRIIDCLETSEARLKLLSKESNVETIELKRGSNSAYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKSRTVYFKNGEECYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=517014 I6I28_RS02315 WP_002471758.1 454892..455608(+) (agrA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
TTGAAAATATTCATTTGTGAAGATGATATTAAGCAACGAGAAAGTATTGAATCCATCATTAATAACTATATTATGATCGA
GGAGAAACCGATGAAAGTTGAGATGTCTACGGATGATCCTTATGCAGTACTTGAGCGTTCTAAAGAAATTAACGACATCG
GTTGTTATTTTTTAGATATTCAACTAGAAGCGGACATGAACGGAATTAAGCTCGCGAGTGAAATTCGTAAACATGACCCT
GTAGGCAATATCATTTTCGTAACGAGTCATAGTGAGCTCACTTATCTCACTTTCGTTTACAAAGTTTCCGCAATGGACTT
TATTTTCAAAGATGAGCCAAATGAGTTACAGAAGCGTATCATTGATTGTCTGGAAACATCTGAAGCACGTCTTAAACTGC
TCAGTAAAGAGAGTAATGTTGAGACGATCGAGTTGAAACGTGGTAGCAACTCCGCCTATGTACAATACGACGACGTGATG
TTCTTTGAATCATCTTCCAAATCCCATCGACTTATCGCTCATTTAGATAATCGACAAATTGAATTCTACGGCAACCTGAA
AGAACTGAGTCAGCTGGATGACCGCTTCTTTAGATGTCACAACAGCTTTGTTGTTAATCGACATAATATCGAGTCGATCG
ATTCGAAGTCACGGACAGTTTATTTTAAAAATGGTGAAGAGTGCTATGCCTCTGTCCGTAACGTGAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832