Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H78_RS05245 Genome accession   NZ_CP066059
Coordinates   1079464..1080828 (-) Length   454 a.a.
NCBI ID   WP_198460229.1    Uniprot ID   A0A7T4IUF6
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074464..1085828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS05220 (I6H78_05220) - 1074798..1075967 (-) 1170 WP_198459014.1 pyridoxal phosphate-dependent aminotransferase -
  I6H78_RS05225 (I6H78_05225) - 1076119..1077129 (+) 1011 WP_198459015.1 YeiH family protein -
  I6H78_RS05230 (I6H78_05230) - 1077158..1077595 (-) 438 WP_198459016.1 CoA-binding protein -
  I6H78_RS05235 (I6H78_05235) - 1077715..1078683 (-) 969 WP_198459017.1 ribose-phosphate diphosphokinase -
  I6H78_RS05240 (I6H78_05240) - 1078897..1079391 (-) 495 WP_007522536.1 beta-class carbonic anhydrase -
  I6H78_RS05245 (I6H78_05245) radA 1079464..1080828 (-) 1365 WP_198460229.1 DNA repair protein RadA Machinery gene
  I6H78_RS05250 (I6H78_05250) - 1080868..1081356 (-) 489 WP_198459018.1 hypothetical protein -
  I6H78_RS05255 (I6H78_05255) - 1081420..1081863 (-) 444 WP_198459019.1 dUTP diphosphatase -
  I6H78_RS05265 (I6H78_05265) tadA 1082049..1082516 (-) 468 WP_033629129.1 tRNA adenosine(34) deaminase TadA -
  I6H78_RS05270 (I6H78_05270) - 1082717..1084003 (-) 1287 WP_198459020.1 adenylosuccinate synthase -
  I6H78_RS09395 comW 1084245..1084481 (-) 237 WP_232619926.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49471.00 Da        Isoelectric Point: 6.1894

>NTDB_id=516966 I6H78_RS05245 WP_198460229.1 1079464..1080828(-) (radA) [Streptococcus oralis strain FDAARGOS_1021]
MIAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKANNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVAMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=516966 I6H78_RS05245 WP_198460229.1 1079464..1080828(-) (radA) [Streptococcus oralis strain FDAARGOS_1021]
ATCATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGTCCTAA
CTGTGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACTAAGCCCATGAAACTAGCTGAGGTGACTTCTATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGT
GTGCTTGGAGGCGGAGTGGTGCCAGGAAGTCTTGTCCTCATCGGTGGAGATCCAGGAATCGGGAAATCAACCCTTCTTTT
ACAAGTTTCAACCCAGTTGTCTCAAGTAGGGACCGTTCTCTATGTTAGTGGGGAGGAGTCTGCTCAGCAGATTAAGTTAC
GAGCAGAGCGCTTGGGAGATATCGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGAGCAGAGGTG
GAGCGCATCCAACCAGATTTTCTCATCATCGACTCCATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTC
TGTTTCTCAGGTGCGTGAGGTGACCGCTGAGCTTATGCAGCTGGCTAAGGCCAATAACATTGCCATCTTTATCGTAGGGC
ATGTGACCAAGGAAGGGACCTTGGCTGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGCCACCATACCTTCCGTATTTTGAGGGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCA
GTCGGGTGGATTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAA
TCGTTGTGGCCATGGAAGGGACCCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCT
AAGCGTACGACGACTGGACTTGATTTCAATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTT
GCAGAACCAGGATGCCTATCTCAAATCTGCTGGTGGTGTGAAATTGGATGAGCCTGCCATTGACTTAGCAGTTGCGGTTG
CTATTGCTTCGAGCTATAAAGATAAGCCTACCAATCCTCAGGAATGTTTTGTGGGAGAATTGGGCTTGACTGGAGAGATT
CGGCGCGTGAATCGTATCGAACAACGCATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATCTATGTACCCAAGAATTC
CTTGACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4IUF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.896

99.78

0.987
  radA Streptococcus mitis SK321

98.896

99.78

0.987
  radA Streptococcus pneumoniae Rx1

98.896

99.78

0.987
  radA Streptococcus pneumoniae D39

98.896

99.78

0.987
  radA Streptococcus pneumoniae R6

98.896

99.78

0.987
  radA Streptococcus pneumoniae TIGR4

98.896

99.78

0.987
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.78

0.628