Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZO18_RS05750 Genome accession   NZ_CP080085
Coordinates   1160253..1161680 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ869Rt     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155253..1166680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO18_RS05710 (KZO18_05690) yeeW 1155437..1155631 (+) 195 WP_000988599.1 DUF5983 family protein -
  KZO18_RS05715 (KZO18_05695) - 1155677..1155757 (+) 81 Protein_1127 hypothetical protein -
  KZO18_RS05720 (KZO18_05700) - 1156046..1156192 (-) 147 Protein_1128 transposase domain-containing protein -
  KZO18_RS05725 (KZO18_05705) - 1156246..1156428 (+) 183 WP_024193496.1 EutP/PduV family microcompartment system protein -
  KZO18_RS05730 (KZO18_05710) tmaR 1156529..1156858 (-) 330 WP_000450409.1 DUF496 family protein -
  KZO18_RS05735 (KZO18_05715) yeeA 1157030..1158088 (-) 1059 WP_001200905.1 FUSC family protein -
  KZO18_RS05740 (KZO18_05720) sbmC 1158286..1158759 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KZO18_RS05745 (KZO18_05725) dacD 1158878..1160044 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZO18_RS05750 (KZO18_05730) sbcB 1160253..1161680 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  KZO18_RS05755 (KZO18_05735) tsuB 1161723..1161950 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZO18_RS05760 (KZO18_05740) tsuA 1161964..1163022 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  KZO18_RS05765 (KZO18_05745) plaP 1163201..1164559 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZO18_RS05770 (KZO18_05750) yoeI 1164549..1164611 (-) 63 WP_010723108.1 membrane protein YoeI -
  KZO18_RS05775 (KZO18_05755) yeeY 1164826..1165755 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  KZO18_RS05780 (KZO18_05760) yeeZ 1165801..1166625 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=516923 KZO18_RS05750 WP_000980570.1 1160253..1161680(+) (sbcB) [Escherichia coli strain 19SZHZ869Rt]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=516923 KZO18_RS05750 WP_000980570.1 1160253..1161680(+) (sbcB) [Escherichia coli strain 19SZHZ869Rt]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581