Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6H63_RS03785 Genome accession   NZ_CP066057
Coordinates   716848..717786 (+) Length   312 a.a.
NCBI ID   WP_066886499.1    Uniprot ID   -
Organism   Moraxella nonliquefaciens strain FDAARGOS_1006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711848..722786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H63_RS03765 (I6H63_03765) - 712488..712685 (+) 198 WP_065256459.1 hypothetical protein -
  I6H63_RS03770 (I6H63_03770) - 712749..713129 (+) 381 WP_066886505.1 Rid family detoxifying hydrolase -
  I6H63_RS03775 (I6H63_03775) - 713317..715593 (+) 2277 WP_145916072.1 primosomal protein N' -
  I6H63_RS03780 (I6H63_03780) - 715646..716671 (-) 1026 WP_067008452.1 ABC transporter substrate-binding protein -
  I6H63_RS03785 (I6H63_03785) pilA 716848..717786 (+) 939 WP_066886499.1 signal recognition particle-docking protein FtsY Machinery gene
  I6H63_RS03790 (I6H63_03790) - 717843..718370 (+) 528 WP_067008455.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I6H63_RS03795 (I6H63_03795) - 718358..718993 (-) 636 WP_067008458.1 DUF1294 domain-containing protein -
  I6H63_RS03800 (I6H63_03800) msrAB 719133..720818 (-) 1686 WP_067008461.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  I6H63_RS03805 (I6H63_03805) ahcY 720912..722285 (-) 1374 WP_067008464.1 adenosylhomocysteinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33399.36 Da        Isoelectric Point: 4.8871

>NTDB_id=516899 I6H63_RS03785 WP_066886499.1 716848..717786(+) (pilA) [Moraxella nonliquefaciens strain FDAARGOS_1006]
MSENKSGFFARMKAGLSKSSKNLSEGLMNVLVGGKEIDDELLEEVEDQLLTADIGVEATNRIITSLTEQTARGDLIYSHS
LYKALKKELVNILEPKVAPLVIDTTKKPFVILMVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGE
RNGISVVAQGQGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVIRVMKKADESAPHECMIVLDAGTGQ
NAISQINLFGEVAPLSGVTITKLDGTAKGGVVFNVAQTTDVPIRFIGVGERIDDLQPFDSKEFVDALIGEEK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=516899 I6H63_RS03785 WP_066886499.1 716848..717786(+) (pilA) [Moraxella nonliquefaciens strain FDAARGOS_1006]
ATGAGTGAGAATAAAAGCGGATTTTTTGCCCGCATGAAAGCAGGGTTGTCCAAATCCAGTAAGAATTTATCAGAAGGTCT
GATGAATGTATTGGTTGGCGGTAAAGAGATTGATGATGAACTTTTAGAGGAGGTTGAAGACCAGCTTCTTACGGCAGATA
TTGGTGTAGAAGCGACCAACAGGATTATCACAAGCCTTACTGAACAGACAGCACGGGGTGATTTGATTTATTCGCATTCG
TTATATAAAGCCCTAAAAAAGGAATTGGTGAACATCTTAGAGCCCAAGGTTGCACCACTTGTCATTGACACAACCAAAAA
GCCTTTTGTCATCTTAATGGTTGGGGTTAATGGCGTGGGTAAAACGACAACCATCGGTAAACTTGCCAAACGCTTACAAG
GTGAGGGCAAATCGGTCATGTTGGCGGCAGGTGATACTTTTCGTGCAGCGGCCACCGAGCAACTGCAAGTTTGGGGTGAA
CGAAACGGCATTTCTGTGGTGGCACAAGGACAAGGTTCAGACAGTGCATCGGTGATTTTTGATGCCATGCAGTCTGCCAA
AGCCAAAGGCATTGATGTGCTGATTGCTGACACCGCAGGGCGACTACAAAACAAGACTTATCTTATGAATGAGCTTGAAA
AAGTCATTCGTGTCATGAAAAAAGCAGATGAGAGTGCTCCGCATGAGTGCATGATTGTGCTAGATGCTGGCACAGGTCAA
AATGCCATCAGTCAGATTAATCTGTTTGGCGAGGTTGCTCCATTGTCAGGTGTTACCATCACCAAGCTAGATGGCACAGC
AAAAGGGGGTGTGGTTTTTAATGTCGCCCAAACCACCGACGTGCCCATTCGTTTTATTGGGGTGGGTGAACGTATTGATG
ATTTACAGCCCTTTGATTCAAAAGAATTTGTAGATGCACTCATCGGCGAGGAAAAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(23-89)

SRP54-type protein, GTPase domain (SRP54)

(108-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.961

98.077

0.51