Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KZO17_RS08415 Genome accession   NZ_CP080080
Coordinates   1781729..1782205 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ886Rt     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776729..1787205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO17_RS08365 (KZO17_08355) sbmC 1777222..1777695 (+) 474 WP_001105417.1 DNA gyrase inhibitor SbmC -
  KZO17_RS08370 (KZO17_08360) yeeA 1777893..1778951 (+) 1059 WP_001200891.1 FUSC family protein -
  KZO17_RS08375 (KZO17_08365) tmaR 1779123..1779452 (+) 330 WP_000450409.1 DUF496 family protein -
  KZO17_RS08380 (KZO17_08370) - 1779553..1779735 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KZO17_RS08385 (KZO17_08375) - 1779789..1779935 (+) 147 Protein_1644 transposase domain-containing protein -
  KZO17_RS08390 (KZO17_08380) - 1780224..1780304 (-) 81 Protein_1645 hypothetical protein -
  KZO17_RS08395 (KZO17_08385) yeeW 1780350..1780544 (-) 195 WP_000988599.1 DUF5983 family protein -
  KZO17_RS08400 (KZO17_08390) - 1780606..1780914 (-) 309 Protein_1647 TA system toxin CbtA family protein -
  KZO17_RS08405 (KZO17_08395) cbeA 1781003..1781371 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  KZO17_RS08410 (KZO17_08400) yeeT 1781445..1781666 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  KZO17_RS08415 (KZO17_08405) radC 1781729..1782205 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  KZO17_RS08420 (KZO17_08410) - 1782221..1782700 (-) 480 WP_000860076.1 antirestriction protein -
  KZO17_RS08425 (KZO17_08415) - 1782782..1783603 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  KZO17_RS08430 (KZO17_08420) - 1783824..1784234 (-) 411 WP_000846713.1 hypothetical protein -
  KZO17_RS08435 (KZO17_08425) - 1784250..1784933 (-) 684 WP_063120636.1 hypothetical protein -
  KZO17_RS08445 (KZO17_08435) - 1786685..1786849 (+) 165 WP_001128468.1 hypothetical protein -
  KZO17_RS08450 - 1786822..1787010 (+) 189 Protein_1657 IS4 family transposase -
  KZO17_RS08455 - 1786989..1787162 (+) 174 Protein_1658 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=516862 KZO17_RS08415 WP_001186773.1 1781729..1782205(-) (radC) [Escherichia coli strain 19SZHZ886Rt]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=516862 KZO17_RS08415 WP_001186773.1 1781729..1782205(-) (radC) [Escherichia coli strain 19SZHZ886Rt]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392