Detailed information NTG0516848

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZO17_RS04870
• Genome accession: NZ_CP080080
• Coordinates: 1018769..1019761 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 19SZHZ886Rt
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1013769..1024761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZO17_RS04840 (KZO17_04830)	ispD	1013830..1014540 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KZO17_RS04845 (KZO17_04835)	ispF	1014540..1015019 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZO17_RS04850 (KZO17_04840)	truD	1015016..1016065 (+)	1050	WP_063120648.1	tRNA pseudouridine(13) synthase TruD	-
KZO17_RS04855 (KZO17_04845)	surE	1016046..1016807 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KZO17_RS04860 (KZO17_04850)	pcm	1016801..1017427 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KZO17_RS04865 (KZO17_04855)	nlpD	1017612..1018706 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KZO17_RS04870 (KZO17_04860)	rpoS	1018769..1019761 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KZO17_RS04875 (KZO17_04865)	ygbN	1019855..1021219 (-)	1365	WP_000104441.1	GntP family transporter	-
KZO17_RS04880 (KZO17_04870)	ygbM	1021308..1022084 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KZO17_RS04885 (KZO17_04875)	ygbL	1022089..1022727 (-)	639	WP_001278994.1	aldolase	-
KZO17_RS04890 (KZO17_04880)	otnK	1022724..1023986 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=516848 KZO17_RS04870 WP_000081550.1 1018769..1019761(+) (rpoS) [Escherichia coli strain 19SZHZ886Rt]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=516848 KZO17_RS04870 WP_000081550.1 1018769..1019761(+) (rpoS) [Escherichia coli strain 19SZHZ886Rt]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715