Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KZO17_RS01915 Genome accession   NZ_CP080080
Coordinates   410718..411395 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ886Rt     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405718..416395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO17_RS01900 (KZO17_01885) chiA 407085..409778 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  KZO17_RS01905 (KZO17_01890) bfd 409947..410141 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KZO17_RS01910 (KZO17_01895) bfr 410213..410689 (+) 477 WP_000675504.1 bacterioferritin -
  KZO17_RS01915 (KZO17_01900) pilD 410718..411395 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  KZO17_RS01920 (KZO17_01905) gspM 411395..411856 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  KZO17_RS01925 (KZO17_01910) gspL 411853..413016 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  KZO17_RS01930 (KZO17_01915) gspK 413031..414014 (-) 984 WP_097479670.1 type II secretion system minor pseudopilin GspK -
  KZO17_RS01935 (KZO17_01920) gspJ 414007..414594 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  KZO17_RS01940 (KZO17_01925) gspI 414587..414964 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  KZO17_RS01945 (KZO17_01930) gspH 414961..415470 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  KZO17_RS01950 (KZO17_01935) gspG 415478..415915 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=516837 KZO17_RS01915 WP_000178161.1 410718..411395(-) (pilD) [Escherichia coli strain 19SZHZ886Rt]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=516837 KZO17_RS01915 WP_000178161.1 410718..411395(-) (pilD) [Escherichia coli strain 19SZHZ886Rt]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378